Multistationarity in the space of total concentrations for systems that admit a monomial parametrization
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Publication:2008268
Abstract: We apply tools from real algebraic geometry to the problem of multistationarity of chemical reaction networks. A particular focus is on the case of reaction networks whose steady states admit a monomial parametrization. For such systems we show that in the space of total concentrations multistationarity is scale invariant: if there is multistationarity for some value of the total concentrations, then there is multistationarity on the entire ray containing this value (possibly for different rate constants) -- and vice versa. Moreover, for these networks it is possible to decide about multistationarity independent of the rate constants by formulating semi-algebraic conditions that involve only concentration variables. These conditions can easily be extended to include total concentrations. Hence quantifier elimination may give new insights into multistationarity regions in the space of total concentrations. To demonstrate this, we show that for the distributive phosphorylation of a protein at two binding sites multistationarity is only possible if the total concentration of the substrate is larger than either the total concentration of the kinase or the total concentration of the phosphatase. This result is enabled by the chamber decomposition of the space of total concentrations from polyhedral geometry. Together with the corresponding sufficiency result of Bihan et al. this yields a characterization of multistationarity up to lower dimensional regions.
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Cites work
- \(n\)-site phosphorylation systems with \(2n-1\) steady states
- A case study on the parametric occurrence of multiple steady states
- Algebraic methods for inferring biochemical networks: a maximum likelihood approach
- Algebraic systems biology: a case study for the Wnt pathway
- Binomial ideals
- Biochemical reaction networks: An invitation for algebraic geometers
- Black-box/white-box simplification and applications to quantifier elimination
- Chemical reaction systems with toric steady states
- Computation of real radicals of polynomial ideals. II
- Concordant chemical reaction networks
- Concordant chemical reaction networks and the species-reaction graph
- Convex Analysis
- Decompositions of commutative monoid congruences and binomial ideals.
- Graph-theoretic approaches to injectivity and multiple equilibria in systems of interacting elements
- Graph-theoretic criteria for injectivity and unique equilibria in general chemical reaction systems
- Graphs of transportation polytopes
- Gröbner bases of reaction networks with intermediate species
- scientific article; zbMATH DE number 421675 (Why is no real title available?)
- scientific article; zbMATH DE number 44637 (Why is no real title available?)
- scientific article; zbMATH DE number 1860735 (Why is no real title available?)
- scientific article; zbMATH DE number 967945 (Why is no real title available?)
- Lower bounds for positive roots and regions of multistationarity in chemical reaction networks
- Multiple steady states for chemical reaction networks of deficiency one
- Multistationarity in Biochemical Networks: Results, Analysis, and Examples
- Multistationarity in mass action networks with applications to ERK activation
- Multistationarity in sequential distributed multisite phosphorylation networks
- Multistationarity in structured reaction networks
- Multistationarity in the activation of a MAPK: parametrizing the relevant region in parameter space
- On the number of steady states in a multiple futile cycle
- polymake: a framework for analyzing convex polytopes
- Power-law kinetics and determinant criteria for the preclusion of multistationarity in networks of interacting species
- Preclusion of switch behavior in networks with mass-action kinetics
- QEPCAD B
- Sign conditions for injectivity of generalized polynomial maps with applications to chemical reaction networks and real algebraic geometry
- Siphons in chemical reaction networks
- Solving parametric polynomial systems
- The existence and uniqueness of steady states for a class of chemical reaction networks
- The multistationarity structure of networks with intermediates and a binomial core network
- The structure of MESSI biological systems
- Toric dynamical systems
Cited in
(15)- Efficiently and effectively recognizing toricity of steady state varieties
- Parameter regions that give rise to \(2\lfloor \frac{n}{2} \rfloor +1\) positive steady states in the \(n\)-site phosphorylation system
- Families of toric chemical reaction networks
- Oscillations and bistability in a model of ERK regulation
- Multistationarity in structured reaction networks
- Optimal stationary modes of Mono-Ierusalimsky kinetic system in view of production intensification effect
- Algebra and geometry in the study of enzymatic cascades
- Kac-Rice formulas and the number of solutions of parametrized systems of polynomial equations
- Parameter Region for Multistationarity in \({\boldsymbol{n-}}\)Site Phosphorylation Networks
- On the connectedness of multistationarity regions of small reaction networks
- Absolute concentration robustness and multistationarity in reaction networks: conditions for coexistence
- Computing positive tropical varieties and lower bounds on the number of positive roots
- Maximum likelihood estimation of log-affine models using detailed-balanced reaction networks
- Positive equilibria in mass action networks: geometry and bounds
- The steady-state degree and mixed volume of a chemical reaction network
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