Toric dynamical systems

From MaRDI portal
Publication:731930

DOI10.1016/j.jsc.2008.08.006zbMath1188.37082arXiv0708.3431OpenAlexW1988741929MaRDI QIDQ731930

Anne Shiu, Gheorghe Craciun, Alicia Dickenstein, Bernd Sturmfels

Publication date: 9 October 2009

Published in: Journal of Symbolic Computation (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0708.3431



Related Items

Explicit exponential convergence to equilibrium for nonlinear reaction-diffusion systems with detailed balance condition, Trend to Equilibrium for Reaction-Diffusion Systems Arising from Complex Balanced Chemical Reaction Networks, Parametric toricity of steady state varieties of reaction networks, Testing binomiality of chemical reaction networks using comprehensive Gröbner systems, Complex-linear invariants of biochemical networks, The rational parameterisation theorem for multisite post-translational modification systems, Disguised toric dynamical systems, Absolutely Complex Balanced Kinetic Systems, Multistationarity in cyclic sequestration-transmutation networks, Sign patterns for chemical reaction networks, Node balanced steady states: unifying and generalizing complex and detailed balanced steady states, Toric ideals of weighted oriented graphs, An Algebraic Approach to Product-form Stationary Distributions for Some Reaction Networks, Detection of Hopf bifurcations in chemical reaction networks using convex coordinates, Critical parameters for singular perturbation reductions of chemical reaction networks, Lower bounds in real algebraic geometry and orientability of real toric varieties, A reaction network approach to the theory of acoustic wave turbulence, Computing all possible graph structures describing linearly conjugate realizations of kinetic systems, A deficiency-based approach to parametrizing positive equilibria of biochemical reaction systems, Computing weakly reversible deficiency zero network translations using elementary flux modes, A computational approach to steady state correspondence of regular and generalized mass action systems, Local and global robustness at steady state, Tikhonov-Fenichel reduction for parameterized critical manifolds with applications to chemical reaction networks, A new decomposition of the graph Laplacian and the binomial structure of mass-action systems, Neural ideals and stimulus space visualization, Permanence of Weakly Reversible Mass-Action Systems with a Single Linkage Class, An Algorithm for Finding Weakly Reversible Deficiency Zero Realizations of Polynomial Dynamical Systems, Catalysis in reaction networks, Chemical reaction systems with toric steady states, The Disguised Toric Locus and Affine Equivalence of Reaction Networks, Transition graph decomposition for complex balanced reaction networks with non-mass-action kinetics, A linear programming approach to weak reversibility and linear conjugacy of chemical reaction networks, On the connectivity of the disguised toric locus of a reaction network, Weakly reversible single linkage class realizations of polynomial dynamical systems: an algorithmic perspective, Sufficient Conditions for Linear Stability of Complex-Balanced Equilibria in Generalized Mass-Action Systems, Lyapunov functions, stationary distributions, and non-equilibrium potential for reaction networks, On classes of reaction networks and their associated polynomial dynamical systems, Families of toric chemical reaction networks, The case for algebraic biology: from research to education, Detailed balance \(=\) complex balance \(+\) cycle balance: a graph-theoretic proof for reaction networks and Markov chains, A computational approach to persistence, permanence, and endotacticity of biochemical reaction systems, Chemical reaction-diffusion networks: convergence of the method of lines, Notes on the deficiency-one theorem: multiple linkage classes, Robust Persistence and Permanence of Polynomial and Power Law Dynamical Systems, On the existence of the positive steady states of weakly reversible deficiency-one mass action systems, Linear conjugacy of chemical reaction networks, Computational Complexity of Atomic Chemical Reaction Networks, On the dependence of the existence of the positive steady states on the rate coefficients for deficiency-one mass action systems: single linkage class, A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks, Translated chemical reaction networks, Existence of Positive Steady States for Weakly Reversible Mass-Action Systems, Systems of polynomials with at least one positive real zero, Boundedness of trajectories for weakly reversible, single linkage class reaction systems, An algebraic method to calculate parameter regions for constrained steady-state distribution in stochastic reaction networks, Stochastically modeled weakly reversible reaction networks with a single linkage class, Tier structure of strongly endotactic reaction networks, The Glansdorff-Prigogine stability criterion for biochemical reaction networks, Conditions for extinction events in chemical reaction networks with discrete state spaces, A stratum approach to global stability of complex balanced systems, Network translation and steady-state properties of chemical reaction systems, The entropy method for reaction-diffusion systems without detailed balance: first order chemical reaction networks, Monostationarity and multistationarity in tree networks of Goldbeter-Koshland loops, How far is complex balancing from detailed balancing?, Finding complex balanced and detailed balanced realizations of chemical reaction networks, Multistationarity in the space of total concentrations for systems that admit a monomial parametrization, Polynomial Dynamical Systems, Reaction Networks, and Toric Differential Inclusions, Commuting birth-and-death processes, Siphons in chemical reaction networks, The Smallest Multistationary Mass-Preserving Chemical Reaction Network, Convergence to equilibrium of renormalised solutions to nonlinear chemical reaction-diffusion systems, Graphically Balanced Equilibria and Stationary Measures of Reaction Networks, Convergence to the complex balanced equilibrium for some chemical reaction-diffusion systems with boundary equilibria, Some Network Conditions for Positive Recurrence of Stochastically Modeled Reaction Networks, Quasi-toric differential inclusions, Unnamed Item, Identifying the parametric occurrence of multiple steady states for some biological networks, Efficiently and effectively recognizing toricity of steady state varieties, Univalent positive polynomial maps and the equilibrium state of chemical networks of reversible binding reactions, Nonnegative Linear Elimination for Chemical Reaction Networks, An Efficient Characterization of Complex-Balanced, Detailed-Balanced, and Weakly Reversible Systems, A generalization of Birch's theorem and vertex-balanced steady states for generalized mass-action systems, Complex-balanced equilibria of generalized mass-action systems: necessary conditions for linear stability, Endotactic Networks and Toric Differential Inclusions, Algebraic Matroids in Action, A reaction network approach to the convergence to equilibrium of quantum Boltzmann equations for Bose gases, Uniqueness of weakly reversible and deficiency zero realizations of dynamical systems, Single-target networks, On the Bijectivity of Families of Exponential/Generalized Polynomial Maps, Multi-Rees algebras and toric dynamical systems, Analysis of mass-action systems by split network translation, A Scheme for Molecular Computation of Maximum Likelihood Estimators for Log-Linear Models, Minimal invariant regions and minimal globally attracting regions for toric differential inclusions, Complexity of model testing for dynamical systems with toric steady states, Foundations of static and dynamic absolute concentration robustness, Symbolic Proof of Bistability in Reaction Networks, Minimal invariant regions and minimal globally attracting regions for variable-k reaction systems, MAPK's networks and their capacity for multistationarity due to toric steady states, Using chemical reaction network theory to show stability of distributional dynamics in game theory, Autocatalytic recombination systems: a reaction network perspective



Cites Work