Weakly reversible single linkage class realizations of polynomial dynamical systems: an algorithmic perspective

DOI10.1007/S10910-023-01540-1arXiv2302.13119OpenAlexW4389192521MaRDI QIDQ6185032FDOQ6185032

Authors: Gheorghe Craciun, Abhishek Deshpande, Jiaxin Jin 

Publication date: 29 January 2024

Published in: Journal of Mathematical Chemistry (Search for Journal in Brave)

Abstract: Systems of differential equations with polynomial right-hand sides are very common in applications. In particular, when restricted to the positive orthant, they appear naturally (according to the law of mass-action kinetics) in ecology, population dynamics, as models of biochemical interaction networks, and models of the spread of infectious diseases. On the other hand, their mathematical analysis is very challenging in general; in particular, it is very difficult to answer questions about the long-term dynamics of the variables (species) in the model, such as questions about persistence and extinction. Even if we restrict our attention to mass-action systems, these questions still remain challenging. On the other hand, if a polynomial dynamical system has a weakly reversible single linkage class ($W!R^1$) realization, then its long-term dynamics is known to be remarkably robust: all the variables are persistent (i.e., no species goes extinct), irrespective of the values of the parameters in the model. Here we describe an algorithm for finding $W!R^1$ realizations of polynomial dynamical systems, whenever such realizations exist.

Full work available at URL: https://arxiv.org/abs/2302.13119

Recommendations

• An Algorithm for Finding Weakly Reversible Deficiency Zero Realizations of Polynomial Dynamical Systems
• Weakly reversible deficiency one realizations of polynomial dynamical systems: an algorithmic perspective
• Polynomial time algorithms to determine weakly reversible realizations of chemical reaction networks
• Uniqueness of weakly reversible and deficiency zero realizations of dynamical systems
• Persistence and permanence of mass-action and power-law dynamical systems

zbMATH Keywords

realizationweakly reversiblesingle linkage class

Mathematics Subject Classification ID

Dynamical systems in biology (37N25) Theory of limit cycles of polynomial and analytic vector fields (existence, uniqueness, bounds, Hilbert's 16th problem and ramifications) for ordinary differential equations (34C07) Chemically reacting flows (80A32) Classical flows, reactions, etc. in chemistry (92E20)

Cites Work

• Detecting autocatalytic, self-sustaining sets in chemical reaction systems
• Centennial History of Hilbert's 16th Problem
• The existence and uniqueness of steady states for a class of chemical reaction networks
• Chemical mechanism structure and the coincidence of the stoichiometric and kinetie subspaces
• Toric dynamical systems
• Computing weakly reversible linearly conjugate chemical reaction networks with minimal defi\-ciency
• On the persistence and global stability of mass-action systems
• A proof of the global attractor conjecture in the single linkage class case
• Title not available (Why is that?)
• Identifiability of chemical reaction networks
• A geometric approach to the global attractor conjecture
• Autocatalysis in reaction networks
• Foundations of chemical reaction network theory
• Autocatalytic recombination systems: a reaction network perspective
• Realizations of kinetic differential equations
• Existence of Positive Steady States for Weakly Reversible Mass-Action Systems
• Permanence of Weakly Reversible Mass-Action Systems with a Single Linkage Class
• An efficient characterization of complex-balanced, detailed-balanced, and weakly reversible systems

Cited In (3)

• Endotactic and strongly endotactic networks with infinitely many positive steady states
• An Algorithm for Finding Weakly Reversible Deficiency Zero Realizations of Polynomial Dynamical Systems
• Weakly reversible deficiency one realizations of polynomial dynamical systems: an algorithmic perspective

This page was built for publication: Weakly reversible single linkage class realizations of polynomial dynamical systems: an algorithmic perspective

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q6185032)