An Efficient Characterization of Complex-Balanced, Detailed-Balanced, and Weakly Reversible Systems
From MaRDI portal
Publication:5208244
DOI10.1137/19M1244494zbMath1436.37097arXiv1812.06214OpenAlexW3000618910WikidataQ126359066 ScholiaQ126359066MaRDI QIDQ5208244
Polly Y. Yu, Jiaxin Jin, Gheorghe Craciun
Publication date: 15 January 2020
Published in: SIAM Journal on Applied Mathematics (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1812.06214
mass-action kineticspolynomial dynamical systemsreaction networkscomplex-balanced systemsflux systemsnetwork identifiability
Dynamical systems in biology (37N25) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Population dynamics (general) (92D25) Chemical kinetics in thermodynamics and heat transfer (80A30) Systems biology, networks (92C42)
Related Items (12)
Disguised toric dynamical systems ⋮ Independent, Incidence Independent and Weakly Reversible Decompositions of Chemical Reaction Networks ⋮ An Algorithm for Finding Weakly Reversible Deficiency Zero Realizations of Polynomial Dynamical Systems ⋮ The Disguised Toric Locus and Affine Equivalence of Reaction Networks ⋮ Source-Only Realizations, Weakly Reversible Deficiency One Networks, and Dynamical Equivalence ⋮ On the connectivity of the disguised toric locus of a reaction network ⋮ Weakly reversible single linkage class realizations of polynomial dynamical systems: an algorithmic perspective ⋮ On classes of reaction networks and their associated polynomial dynamical systems ⋮ Detailed balance \(=\) complex balance \(+\) cycle balance: a graph-theoretic proof for reaction networks and Markov chains ⋮ Uniqueness of weakly reversible and deficiency zero realizations of dynamical systems ⋮ Single-target networks ⋮ Autocatalytic recombination systems: a reaction network perspective
Cites Work
- Unnamed Item
- A linear programming approach to weak reversibility and linear conjugacy of chemical reaction networks
- Translated chemical reaction networks
- A tutorial on chemical reaction network dynamics
- Dynamical properties of models for the Calvin cycle
- Finding complex balanced and detailed balanced realizations of chemical reaction networks
- Product-form stationary distributions for deficiency zero chemical reaction networks
- Toric dynamical systems
- Identifiability of chemical reaction networks
- Graph-theoretic methods for the analysis of chemical and biochemical networks. II. Oscillations in networks with delays
- Recasting nonlinear differential equations as S-systems: a canonical nonlinear form
- Chemical mechanism structure and the coincidence of the stoichiometric and kinetie subspaces
- Semistability of complex balanced kinetic systems with arbitrary time delays
- Chemical reaction-diffusion networks: convergence of the method of lines
- The existence and uniqueness of steady states for a class of chemical reaction networks
- Polynomial time algorithms to determine weakly reversible realizations of chemical reaction networks
- A generalization of Birch's theorem and vertex-balanced steady states for generalized mass-action systems
- Single-target networks
- Stabilizing feedback design for time delayed polynomial systems using kinetic realizations
- Graph-theoretic approaches to injectivity and multiple equilibria in systems of interacting elements
- Coexistence and chaos in complex ecologies
- Local and Global Stability of Equilibria for a Class of Chemical Reaction Networks
- A Geometric Approach to the Global Attractor Conjecture
- Cycle Structure in SR and DSR Graphs: Implications for Multiple Equilibria and Stable Oscillation in Chemical Reaction Networks
- On the Persistence and Global Stability of Mass-Action Systems
- A Proof of the Global Attractor Conjecture in the Single Linkage Class Case
- A reaction network approach to the convergence to equilibrium of quantum Boltzmann equations for Bose gases
- Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction
- Existence of Positive Steady States for Weakly Reversible Mass-Action Systems
- Understanding bistability in complex enzyme-driven reaction networks
- Persistence and Permanence of Mass-Action and Power-Law Dynamical Systems
- Trend to Equilibrium for Reaction-Diffusion Systems Arising from Complex Balanced Chemical Reaction Networks
- Multiple Equilibria in Complex Chemical Reaction Networks: I. The Injectivity Property
- Multiple Equilibria in Complex Chemical Reaction Networks: II. The Species-Reaction Graph
This page was built for publication: An Efficient Characterization of Complex-Balanced, Detailed-Balanced, and Weakly Reversible Systems
