On classes of reaction networks and their associated polynomial dynamical systems
From MaRDI portal
(Redirected from Publication:2201038)
Abstract: In the study of reaction networks and the polynomial dynamical systems that they generate, special classes of networks with important properties have been identified. These include reversible, weakly reversible}, and, more recently, endotactic networks. While some inclusions between these network types are clear, such as the fact that all reversible networks are weakly reversible, other relationships are more complicated. Adding to this complexity is the possibility that inclusions be at the level of the dynamical systems generated by the networks rather than at the level of the networks themselves. We completely characterize the inclusions between reversible, weakly reversible, endotactic, and strongly endotactic network, as well as other less well studied network types. In particular, we show that every strongly endotactic network in two dimensions can be generated by an extremally weakly reversible network. We also introduce a new class of source-only networks, which is a computationally convenient property for networks to have, and show how this class relates to the above mentioned network types.
Recommendations
- Polynomial dynamical systems, reaction networks, and toric differential inclusions
- scientific article; zbMATH DE number 7774177
- Families of polynomials in the study of biochemical reaction networks
- A family of sparse polynomial systems arising in chemical reaction systems
- Univalent positive polynomial maps and the equilibrium state of chemical networks of reversible binding reactions
- Dynamical equivalence and linear conjugacy of chemical reaction networks: new results and methods
- Polynomial dynamical systems in systems biology
- On the multistationarity of chemical reaction networks
- Dynamical properties of discrete reaction networks
- On the complexity of occurrence and convergence problems in reaction systems
Cites work
- scientific article; zbMATH DE number 3899559 (Why is no real title available?)
- scientific article; zbMATH DE number 44637 (Why is no real title available?)
- scientific article; zbMATH DE number 734901 (Why is no real title available?)
- scientific article; zbMATH DE number 734930 (Why is no real title available?)
- A geometric approach to the global attractor conjecture
- A proof of the global attractor conjecture in the single linkage class case
- A tutorial on chemical reaction network dynamics
- An efficient characterization of complex-balanced, detailed-balanced, and weakly reversible systems
- Boundedness of trajectories for weakly reversible, single linkage class reaction systems
- Comment on ``Identifiability of chemical reaction networks by G. Craciun and C. Pantea
- Computing sparse and dense realizations of reaction kinetic systems
- Computing weakly reversible linearly conjugate chemical reaction networks with minimal defi\-ciency
- Concordant chemical reaction networks
- Global Asymptotic Stability for a Class of Nonlinear Chemical Equations
- Identifiability of chemical reaction networks
- Large deviations theory for Markov jump models of chemical reaction networks
- Linear conjugacy of chemical reaction networks
- Lyapunov functions, stationary distributions, and non-equilibrium potential for reaction networks
- Mathematical analysis of the smallest chemical reaction system with Hopf bifurcation
- Multiple Equilibria in Complex Chemical Reaction Networks: I. The Injectivity Property
- Multiple Equilibria in Complex Chemical Reaction Networks: II. The Species-Reaction Graph
- Non-explosivity of stochastically modeled reaction networks that are complex balanced
- On the persistence and global stability of mass-action systems
- Persistence and permanence of mass-action and power-law dynamical systems
- Polynomial dynamical systems, reaction networks, and toric differential inclusions
- Product-form Poisson-like distributions and complex balanced reaction systems
- Product-form stationary distributions for deficiency zero chemical reaction networks
- Product-form stationary distributions for deficiency zero networks with non-mass action kinetics
- Realizations of kinetic differential equations
- Results on stochastic reaction networks with non-mass action kinetics
- Robust persistence and permanence of polynomial and power law dynamical systems
- Smallest chemical reaction system with Hopf bifurcation
- Some network conditions for positive recurrence of stochastically modeled reaction networks
- Statistical Model for Biochemical Network Inference
- The dynamics of weakly reversible population processes near facets
- The existence and uniqueness of steady states for a class of chemical reaction networks
- The inheritance of nondegenerate multistationarity in chemical reaction networks
- Toric dynamical systems
- Translated chemical reaction networks
- Which small reaction networks are multistationary?
Cited in
(14)- Local geometric structures and bifurcations of a polynomial differential system from a general multi-molecular reaction
- Persistence and stability of a class of kinetic compartmental models
- On the connectivity of the disguised toric locus of a reaction network
- Families of polynomials in the study of biochemical reaction networks
- Parametric toricity of steady state varieties of reaction networks
- A lower bound on the dimension of the \(\mathbb{R}\)-disguised toric locus of a reaction network
- Coping with dynamical reaction system topologies using deterministic P modules: a case study of photosynthesis
- Univalent positive polynomial maps and the equilibrium state of chemical networks of reversible binding reactions
- Endotactic and strongly endotactic networks with infinitely many positive steady states
- Tier structure of strongly endotactic reaction networks
- An Algorithm for Finding Weakly Reversible Deficiency Zero Realizations of Polynomial Dynamical Systems
- Single-target networks
- scientific article; zbMATH DE number 7774177 (Why is no real title available?)
- Source-Only Realizations, Weakly Reversible Deficiency One Networks, and Dynamical Equivalence
This page was built for publication: On classes of reaction networks and their associated polynomial dynamical systems
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2201038)
