Large deviations theory for Markov jump models of chemical reaction networks

DOI10.1214/17-AAP1344zbMath1410.60034arXiv1701.02126OpenAlexW2962734224WikidataQ129738399 ScholiaQ129738399MaRDI QIDQ1661572

Andrea Agazzi, Jean-Pierre Eckmann, Amir Dembo

Publication date: 16 August 2018

Published in: The Annals of Applied Probability (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1701.02126

zbMATH Keywords

Wentzell-Freidlin theoryLyapunov functionslarge deviation principlechemical reaction networksjump Markov processestoric jets

Mathematics Subject Classification ID

Large deviations (60F10) Chemical kinetics in thermodynamics and heat transfer (80A30)

Related Items

Large deviations for Markov jump processes with uniformly diminishing rates ⋮ Modeling of chemical reaction systems with detailed balance using gradient structures ⋮ Prevalence of deficiency-zero reaction networks in an Erdös–Rényi framework ⋮ Revisit of macroscopic dynamics for some non-equilibrium chemical reactions from a Hamiltonian viewpoint ⋮ Large Deviation Principle and Thermodynamic Limit of Chemical Master Equation via Nonlinear Semigroup ⋮ Fast reaction limits via \(\Gamma\)-convergence of the flux rate functional ⋮ Individual Molecules Dynamics in Reaction Network Models ⋮ On classes of reaction networks and their associated polynomial dynamical systems ⋮ Stochastically modeled weakly reversible reaction networks with a single linkage class ⋮ Tier structure of strongly endotactic reaction networks ⋮ Moderate deviations of density-dependent Markov chains ⋮ Large and moderate deviation principles for susceptible-infected-removed epidemic in a random environment ⋮ Many-server asymptotics for join-the-shortest-queue: large deviations and rare events ⋮ Detailed balance, local detailed balance, and global potential for stochastic chemical reaction networks ⋮ Stochastic chemical reaction networks for robustly approximating arbitrary probability distributions ⋮ Large deviations of Markov chains with multiple time-scales ⋮ Large deviations of jump process fluxes ⋮ On the geometry of chemical reaction networks: Lyapunov function and large deviations ⋮ Phase Reduction of Stochastic Biochemical Oscillators ⋮ Stationary Distributions and Condensation in Autocatalytic Reaction Networks ⋮ Results on stochastic reaction networks with non-mass action kinetics

Uses Software

• CoNtRol

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Lyapunov functions, stationary distributions, and non-equilibrium potential for reaction networks
• A computational approach to persistence, permanence, and endotacticity of biochemical reaction systems
• Metric combinatorics of convex polyhedra: cut loci and nonoverlapping unfoldings
• Dynamical properties of discrete reaction networks
• Local stability of Kolmogorov forward equations for finite state nonlinear Markov processes
• Product-Form Poisson-Like Distributions and Complex Balanced Reaction Systems
• A Geometric Approach to the Global Attractor Conjecture
• A Proof of the Global Attractor Conjecture in the Single Linkage Class Case
• Two-scale large deviations for chemical reaction kinetics through second quantization path integral
• Ergodic Properties of Markov Processes
• Large Deviations with Diminishing Rates