Stochastic chemical reaction networks for robustly approximating arbitrary probability distributions
DOI10.1016/j.tcs.2019.08.013zbMath1436.68111arXiv1810.02854OpenAlexW2895157742MaRDI QIDQ2007716
Daniele Cappelletti, Erik Winfree, David F. Anderson, Andrés Ortiz-Muñoz
Publication date: 22 November 2019
Published in: Theoretical Computer Science (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1810.02854
robustnessapproximationmolecular computingdetailed balancearbitrary distributionsstochastic chemical reaction networks
Classical flows, reactions, etc. in chemistry (92E20) Applications of continuous-time Markov processes on discrete state spaces (60J28) Probability in computer science (algorithm analysis, random structures, phase transitions, etc.) (68Q87) Biologically inspired models of computation (DNA computing, membrane computing, etc.) (68Q07)
Related Items
Cites Work
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Propagating Lyapunov functions to prove noise-induced stabilization
- Gene expression dynamics in randomly varying environments
- Product-form stationary distributions for deficiency zero chemical reaction networks
- Hybrid and multiscale modelling
- Lyapunov functions, stationary distributions, and non-equilibrium potential for reaction networks
- Mathematical challenges in integrative physiology
- Computation with finite stochastic chemical reaction networks
- Monotone matrices and monotone Markov processes
- A reaction network scheme which implements the EM algorithm
- Large deviations theory for Markov jump models of chemical reaction networks
- A stochastic molecular scheme for an artificial cell to infer its environment from partial observations
- Chemical Boltzmann machines
- Markovian modelling of gene product synthesis
- Separation of time-scales and model reduction for stochastic reaction networks
- Non-explosivity of stochastically modeled reaction networks that are complex balanced
- Results on stochastic reaction networks with non-mass action kinetics
- Tier structure of strongly endotactic reaction networks
- Approximate analysis of biological systems by hybrid switching jump diffusion
- A constrained Langevin approximation for chemical reaction networks
- Product-Form Poisson-Like Distributions and Complex Balanced Reaction Systems
- A Scheme for Molecular Computation of Maximum Likelihood Estimators for Log-Linear Models
- Probability 1 Computation with Chemical Reaction Networks
- Approximation and inference methods for stochastic biochemical kinetics—a tutorial review
- Stability of Markovian processes III: Foster–Lyapunov criteria for continuous-time processes
- Markov Chains
- Graphically Balanced Equilibria and Stationary Measures of Reaction Networks
- Reaction Kinetics: Exercises, Programs and Theorems
- Some Network Conditions for Positive Recurrence of Stochastically Modeled Reaction Networks
- Strong Turing Completeness of Continuous Chemical Reaction Networks and Compilation of Mixed Analog-Digital Programs
- Stochastic Analysis of Biochemical Systems
- Noise in Gene Regulatory Networks
- Finite Time Distributions of Stochastically Modeled Chemical Systems with Absolute Concentration Robustness
- Stochastic approach to chemical kinetics
- Chemical systems consisting only of elementary steps -- a paradigma for nonlinear behavior