A constrained Langevin approximation for chemical reaction networks

DOI10.1214/18-AAP1421MaRDI QIDQ2415508zbMATH OpenOpenAlexWikidataFDO

Authors Saul C. Leite, R. J. Williams

Publication date 22 May 2019

Published in The Annals of Applied Probability (Search for Journal in Brave)

Full work available at URL https://projecteuclid.org/euclid.aoap/1550566837

zbMATH Keywords

chemical reaction networksdensity dependent Markov chainsdiffusion approximationjump-diffusionLangevin approximationlinear noise approximationscaling limitstochastic differential equation with reflection

Mathematics Subject Classification ID

Applications of continuous-time Markov processes on discrete state spaces (60J28) Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cited in

(21)

• Quasi-steady-state approximation for chemical reaction networks
• Uses and abuses of the Langevin equation for chemical reactions in condensed phases
• Gaussian process approximations for fast inference from infectious disease data
• Adaptive aggregation of Markov chains: quantitative analysis of chemical reaction networks
• Chemical reaction-diffusion networks: convergence of the method of lines
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• Stochastic chemical reaction networks for robustly approximating arbitrary probability distributions
• Nonlinear Langevin model with product stochasticity for biological networks: the case of the Schnakenberg model
• Large deviations and exit-times for reflected McKean-Vlasov equations with self-stabilising terms and superlinear drifts
• Transition graph decomposition for complex balanced reaction networks with non-mass-action kinetics
• Chemical master versus chemical Langevin for first-order reaction networks
• On constrained Langevin equations and (bio)chemical reaction networks
• An algebraic method to calculate parameter regions for constrained steady-state distribution in stochastic reaction networks
• Positivity-preserving methods for ordinary differential equations
• The Status of the QSSA Approximation in Stochastic Simulations of Reaction Networks
• Large Deviations for Additive Functionals of Reflected Jump-Diffusions
• Stochastic reaction networks within interacting compartments
• Simplest random walk for approximating Robin boundary value problems and ergodic limits of reflected diffusions
• A numerical method for ergodic optimal control of switching diffusions with reflection
• Noise-induced instabilities in a stochastic Brusselator
• Error bounds for one-dimensional constrained Langevin approximations for nearly density-dependent Markov chains

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