A computational approach to persistence, permanence, and endotacticity of biochemical reaction systems
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Publication:907134
DOI10.1007/s00285-015-0892-1zbMath1350.92022arXiv1412.4662OpenAlexW1489095791WikidataQ45013693 ScholiaQ45013693MaRDI QIDQ907134
Pete Donnell, Casian Pantea, Matthew D. Johnston
Publication date: 2 February 2016
Published in: Journal of Mathematical Biology (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1412.4662
Mixed integer programming (90C11) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Markov and semi-Markov decision processes (90C40)
Related Items (8)
Uniform and strict persistence in monotone skew-product semiflows with applications to non-autonomous Nicholson systems ⋮ Large deviations theory for Markov jump models of chemical reaction networks ⋮ Robust Persistence and Permanence of Polynomial and Power Law Dynamical Systems ⋮ Conditions for extinction events in chemical reaction networks with discrete state spaces ⋮ A computational approach to extinction events in chemical reaction networks with discrete state spaces ⋮ Symbolic analysis of multiple steady states in a MAPK chemical reaction network ⋮ Endotactic Networks and Toric Differential Inclusions ⋮ CoNtRol
Uses Software
Cites Work
- Chemical reaction systems with toric steady states
- A linear programming approach to weak reversibility and linear conjugacy of chemical reaction networks
- Translated chemical reaction networks
- Toric dynamical systems
- SCIP: solving constraint integer programs
- Computing sparse and dense realizations of reaction kinetic systems
- On the number of steady states in a multiple futile cycle
- The rational parameterisation theorem for multisite post-translational modification systems
- The existence and uniqueness of steady states for a class of chemical reaction networks
- Multiple steady states for chemical reaction networks of deficiency one
- A global convergence result for processive multisite phosphorylation systems
- Frequency spectra and probability distributions for quantum fluctuations
- Translation-invariant monotone systems, and a global convergence result for enzymatic futile cycles
- A Petri net approach to the study of persistence in chemical reaction networks
- A Geometric Approach to the Global Attractor Conjecture
- On the Persistence and Global Stability of Mass-Action Systems
- A Proof of the Global Attractor Conjecture in the Single Linkage Class Case
- Persistence Definitions and their Connections
- Persistence and Permanence of Mass-Action and Power-Law Dynamical Systems
- Global stability of complex balanced mechanisms
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