Computing sparse and dense realizations of reaction kinetic systems
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Cites work
- scientific article; zbMATH DE number 429663 (Why is no real title available?)
- scientific article; zbMATH DE number 44637 (Why is no real title available?)
- scientific article; zbMATH DE number 193411 (Why is no real title available?)
- scientific article; zbMATH DE number 976325 (Why is no real title available?)
- scientific article; zbMATH DE number 1498519 (Why is no real title available?)
- Alternative integer-linear-programming formulations of the Clar problem in hexagonal systems
- Control of systems integrating logic, dynamics, and constraints
- Identifiability of chemical reaction networks
- Local controllability of reactions
- Local dissipative Hamiltonian description of reversible reaction networks
- Modeling and integer programming techniques applied to propositional calculus
- Multiple Equilibria in Complex Chemical Reaction Networks: I. The Injectivity Property
- Multiple Equilibria in Complex Chemical Reaction Networks: II. The Species-Reaction Graph
- On local observability of chemical systems
- Permuting Sparse Rectangular Matrices into Block-Diagonal Form
- Sparse nonnegative solution of underdetermined linear equations by linear programming
- Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction
- Understanding bistability in complex enzyme-driven reaction networks
Cited in
(33)- Complex Balancing Reconstructed to the Asymptotic Stability of Mass-Action Chemical Reaction Networks with Conservation Laws
- A new efficient algorithm for determining all structurally different realizations of kinetic systems
- Reachability analysis of low-order discrete state reaction networks obeying conservation laws
- Engineering model reduction and entropy-based Lyapunov functions in chemical reaction kinetics
- Efficient numerical methods for the optimisation of large kinetic reaction mechanisms
- Conditions for extinction events in chemical reaction networks with discrete state spaces
- Parametric uniqueness of deficiency zero reaction networks
- Optimal Reaction Coordinates: Variational Characterization and Sparse Computation
- An Algorithm for Finding Weakly Reversible Deficiency Zero Realizations of Polynomial Dynamical Systems
- Realizations of quasi-polynomial systems and application for stability analysis
- Realizations of kinetic differential equations
- A computational approach to the structural analysis of uncertain kinetic systems
- A linear programming approach to dynamical equivalence, linear conjugacy, and the deficiency one theorem
- Linear conjugacy in biochemical reaction networks with rational reaction rates
- A linear programming approach to weak reversibility and linear conjugacy of chemical reaction networks
- Reaction network realizations of rational biochemical systems and their structural properties
- Finding complex balanced and detailed balanced realizations of chemical reaction networks
- Linear conjugacy of chemical reaction networks
- Computing all sparse kinetic structures for a Lorenz system using optimization
- A convex optimization framework for the identification of homogeneous reaction systems
- A computational approach to steady state correspondence of regular and generalized mass action systems
- Computing zero deficiency realizations of kinetic systems
- On classes of reaction networks and their associated polynomial dynamical systems
- A computational approach to persistence, permanence, and endotacticity of biochemical reaction systems
- An inverse problem in reaction kinetics
- Computing all possible graph structures describing linearly conjugate realizations of kinetic systems
- Analysis of mass-action systems by split network translation
- A Sparse Interpolation Algorithm for Dynamical Simulations in Computational Chemistry
- Rigorously proven chaos in chemical kinetics
- Quadratic first integrals of kinetic differential equations
- A computational approach to linear conjugacy in a class of power law kinetic systems
- Polynomial time algorithms to determine weakly reversible realizations of chemical reaction networks
- A computational approach to extinction events in chemical reaction networks with discrete state spaces
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