A computational approach to steady state correspondence of regular and generalized mass action systems
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Publication:891844
DOI10.1007/S11538-015-0077-5zbMATH Open1327.80016arXiv1407.4796OpenAlexW2962826425WikidataQ50927848 ScholiaQ50927848MaRDI QIDQ891844FDOQ891844
Authors: Matthew D. Johnston 
Publication date: 17 November 2015
Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)
Abstract: It has been recently observed that the dynamical properties of mass action systems arising from many models of biochemical reaction networks can be derived by considering the corresponding properties of a related generalized mass action system. The correspondence process known as network translation in particular has been shown to be useful in characterizing a system's steady states. In this paper, we further develop the theory of network translation with particular focus on a subclass of translations known as improper translations. For these translations, we derive conditions on the network topology of the translated network which are sufficient to guarantee the original and translated systems share the same steady states. We then present a mixed-integer linear programming (MILP) algorithm capable of determining whether a mass action system can be corresponded to a generalized system through the process of network translation.
Full work available at URL: https://arxiv.org/abs/1407.4796
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mixed integer linear programmingchemical reaction networkmass action systemgeneralized networknetwork translation
Linear programming (90C05) Programming involving graphs or networks (90C35) Chemical kinetics in thermodynamics and heat transfer (80A30)
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Cited In (12)
- On the Bijectivity of Families of Exponential/Generalized Polynomial Maps
- Linear conjugacy of chemical kinetic systems
- A deficiency-based approach to parametrizing positive equilibria of biochemical reaction systems
- Sufficient Conditions for Linear Stability of Complex-Balanced Equilibria in Generalized Mass-Action Systems
- Network translation and steady-state properties of chemical reaction systems
- A generalization of Birch's theorem and vertex-balanced steady states for generalized mass-action systems
- A linear programming approach to dynamical equivalence, linear conjugacy, and the deficiency one theorem
- Computational Translation Framework Identifies Biochemical Reaction Networks with Special Topologies and Their Long-Term Dynamics
- Complex Balanced Equilibria of Weakly Reversible Poly-Pl Systems: Existence, Stability, and Robustness
- Analysis of mass-action systems by split network translation
- Computing weakly reversible deficiency zero network translations using elementary flux modes
- A computational approach to linear conjugacy in a class of power law kinetic systems
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