Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction
From MaRDI portal
(Redirected from Publication:4540425)
Abstract: This paper deals with the theory of structure, stability, robustness, and stabilization for an appealing class of nonlinear systems which arises in the analysis of chemical networks. The results given here extend, but are also heavily based upon, certain previous work by Feinberg, Horn, and Jackson, of which a self-contained and streamlined exposition is included. The theoretical conclusions are illustrated through an application to the kinetic proofreading model proposed by McKeithan for T-cell receptor signal transduction. (Update includes, among other topics, remarks on extensions to certain systems with Michaelis-Menten kinetics.)
Recommendations
- Graph-theoretic characterizations of monotonicity of chemical networks in reaction coordinates
- Structural and functional robustness of the adaptive-sorting signaling network
- Graphical characterizations of robust stability in biological interaction networks
- scientific article; zbMATH DE number 66125
- Monotone chemical reaction networks
Cited in
(only showing first 100 items - show all)- Homotopy methods for counting reaction network equilibria
- Stabilization of positive systems with first integrals
- Semistability of complex balanced kinetic systems with arbitrary time delays
- Node balanced steady states: unifying and generalizing complex and detailed balanced steady states
- Stability analysis of the Michaelis-Menten approximation of a mixed mechanism of a phosphorylation system
- Polyhedral Lyapunov functions structurally ensure global asymptotic stability of dynamical networks iff the Jacobian is non-singular
- Chemical reaction-diffusion networks: convergence of the method of lines
- Convergence to the complex balanced equilibrium for some chemical reaction-diffusion systems with boundary equilibria
- Sign-sensitivities for reaction networks: an algebraic approach
- Uniqueness of weakly reversible and deficiency zero realizations of dynamical systems
- Results on stochastic reaction networks with non-mass action kinetics
- Minimal invariant regions and minimal globally attracting regions for variable-k reaction systems
- A computational approach to the structural analysis of uncertain kinetic systems
- Steady-states of receptor-ligand dynamics: a theoretical framework
- Delay stability of reaction systems
- Stabilizing feedback design for time delayed polynomial systems using kinetic realizations
- The deficiency zero theorem and global asymptotic stability for a class of chemical reaction networks with arbitrary time delays
- Complexity of model testing for dynamical systems with toric steady states
- A qualitative mathematical analysis of a class of nonlinear differential equations: applications in biochemistry
- Intermediates and generic convergence to equilibria
- Asymptotic stability of a non-weakly reversible biochemical reaction network composed of cardiac hypertrophy factors
- Gröbner bases of reaction networks with intermediate species
- On the existence of the positive steady states of weakly reversible deficiency-one mass action systems
- A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks
- Multistationarity in the activation of a MAPK: parametrizing the relevant region in parameter space
- A Petri net approach to the study of persistence in chemical reaction networks
- Toward a thermodynamic characterization of chemical reaction networks
- Molecular systems biology and control
- State-estimators for chemical reaction networks of Feinberg-Horn-Jackson zero deficiency type
- The general recombination equation in continuous time and its solution
- T cell activation: Kinetic proofreading, serial engagement and cell adhesion
- Modeling and analysis of early events in T-lymphocyte antigen-activated intracellular-signalling pathways
- Monotone chemical reaction networks
- On the estimation of robustness and filtering ability of dynamic biochemical networks under process delays, internal parametric perturbations and external disturbances
- Dynamics of ERK regulation in the processive limit
- Structural analysis in biology: a control-theoretic approach
- Revisit of macroscopic dynamics for some non-equilibrium chemical reactions from a Hamiltonian viewpoint
- Stability analysis for Butlerov chemical reaction in batch reactor
- Stability of nonnegative Lur'e systems
- A network dynamics approach to chemical reaction networks
- A scheme for molecular computation of maximum likelihood estimators for log-linear models
- Computing all sparse kinetic structures for a Lorenz system using optimization
- Biological implications of dynamical phases in non-equilibrium networks
- A stratum approach to global stability of complex balanced systems
- Structural and functional robustness of the adaptive-sorting signaling network
- scientific article; zbMATH DE number 3939150 (Why is no real title available?)
- Semistability of switched linear systems with application to PageRank algorithms
- Catalysis in reaction networks
- A linear programming approach to weak reversibility and linear conjugacy of chemical reaction networks
- Notes on the deficiency-one theorem: multiple linkage classes
- \(\sqrt{n}\)-consistent parameter estimation for systems of ordinary differential equations: bypassing numerical integration via smoothing
- Complex Balancing Reconstructed to the Asymptotic Stability of Mass-Action Chemical Reaction Networks with Conservation Laws
- Existence of Positive Steady States for Weakly Reversible Mass-Action Systems
- Persistence in chemical reaction networks with arbitrary time delays
- Hamiltonian perspective on compartmental reaction-diffusion networks
- An observer for mass-action chemical reaction networks
- Piecewise-linear Lyapunov functions for structural stability of biochemical networks
- Endotactic Networks and Toric Differential Inclusions
- Complex and detailed balancing of chemical reaction networks revisited
- Quasi-steady-state and singular perturbation reduction for reaction networks with noninteracting species
- Intermediates, catalysts, persistence, and boundary steady states
- Modeling of physical network systems
- An efficient characterization of complex-balanced, detailed-balanced, and weakly reversible systems
- Lyapunov function partial differential equations for chemical reaction networks: some special cases
- How far is complex balancing from detailed balancing?
- Finding complex balanced and detailed balanced realizations of chemical reaction networks
- Polynomial dynamical systems, reaction networks, and toric differential inclusions
- Graphical characterizations of robust stability in biological interaction networks
- Application of one‐step method to parameter estimation in ODE models
- Product-form stationary distributions for deficiency zero chemical reaction networks
- A new decomposition of the graph Laplacian and the binomial structure of mass-action systems
- An Algorithm for Finding Weakly Reversible Deficiency Zero Realizations of Polynomial Dynamical Systems
- Sufficient conditions for regularity, positive recurrence, and absorption in level‐dependent QBD processes and related block‐structured Markov chains
- Individual Molecules Dynamics in Reaction Network Models
- The Disguised Toric Locus and Affine Equivalence of Reaction Networks
- On the connectivity of the disguised toric locus of a reaction network
- Linear conjugacy of chemical reaction networks
- Engineering model reduction and entropy-based Lyapunov functions in chemical reaction kinetics
- Boundedness of trajectories for weakly reversible, single linkage class reaction systems
- Reachability, persistence, and constructive chemical reaction networks. I: Reachability approach to the persistence of chemical reaction networks
- Arc-length-based Lyapunov tests for convergence and stability with applications to systems having a continuum of equilibria
- A lower bound on the dimension of the \(\mathbb{R}\)-disguised toric locus of a reaction network
- The Glansdorff-Prigogine stability criterion for biochemical reaction networks
- Optimal distributed linear averaging
- Asymptotic stability of delayed complex balanced reaction networks with non-mass action kinetics
- Infinitesimal homeostasis in mass-action systems
- Stability of biochemical reaction networks with general kinetics and distributed time delays
- Realizations through weakly reversible networks and the globally attracting locus
- Computing positive tropical varieties and lower bounds on the number of positive roots
- Statistical approach to the equilibrium conditions in connected reaction graphs
- Maximum likelihood estimation of log-affine models using detailed-balanced reaction networks
- Persistence in delayed chemical reaction network systems with time-varying kinetics
- Weakly reversible deficiency zero realizations of reaction networks
- Quantitative pharmacology methods for bispecific T Cell Engagers
- The dimension of the disguised toric locus of a reaction network
- Network combination to persistence of high-dimensional delayed complex balanced mass-action systems
- A stochastic version of the Hopfield-Ninio kinetic proofreading model
- First-order endotactic reaction networks
- Toric dynamical systems
- On structural contraction of biological interaction networks
This page was built for publication: Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q4540425)