Endotactic Networks and Toric Differential Inclusions
From MaRDI portal
differential inclusionsendotactic networksmass-action kineticspermanencepersistencereaction networks
Toric varieties, Newton polyhedra, Okounkov bodies (14M25) Ordinary differential equations and connections with real algebraic geometry (fewnomials, desingularization, zeros of abelian integrals, etc.) (34C08) Dynamical aspects of statistical mechanics (37A60) Nonautonomous smooth dynamical systems (37C60) Dynamical systems in biology (37N25) Lattice polytopes in convex geometry (including relations with commutative algebra and algebraic geometry) (52B20)
Abstract: An important dynamical property of biological interaction networks is persistence, which intuitively means that "no species goes extinct". It has been conjectured that dynamical system models of weakly reversible networks (i.e., networks for which each reaction is part of a cycle) are persistent. The property of persistence is also related to the well known global attractor conjecture. An approach for the proof of the global attractor conjecture uses an embedding of weakly reversible dynamical systems into toric differential inclusions. We show that the larger class of endotactic dynamical systems can also be embedded into toric differential inclusions. Moreover, we show that, essentially, endotactic networks form the largest class of networks with this property.
Recommendations
- On complex tori with many endomorphisms
- Endomotives of toric varieties
- Quasi-toric differential inclusions
- Diffeomorphisms and almost complex structures on tori
- Torus embeddings and dualizing complexes
- Parameter spaces for complex tori with endomorphism structure
- scientific article; zbMATH DE number 4051791
- On exact toral endomorphisms
- Endomorphism algebras of complex tori
- De Rham homology for networks of manifolds
Cites work
- A computational approach to persistence, permanence, and endotacticity of biochemical reaction systems
- A geometric approach to the global attractor conjecture
- A Petri net approach to the study of persistence in chemical reaction networks
- A proof of the global attractor conjecture in the single linkage class case
- Autocatalysis in reaction networks
- Catalysis in reaction networks
- Equality relating Euclidean distance cone to positive semidefinite cone
- Existence of Positive Steady States for Weakly Reversible Mass-Action Systems
- Global Asymptotic Stability for a Class of Nonlinear Chemical Equations
- Global stability of complex balanced mechanisms
- scientific article; zbMATH DE number 43585 (Why is no real title available?)
- Introduction to Toric Varieties. (AM-131)
- Mathematical biology. Vol. 2: Spatial models and biomedical applications.
- On the persistence and global stability of mass-action systems
- Permanence of Weakly Reversible Mass-Action Systems with a Single Linkage Class
- Persistence and permanence of mass-action and power-law dynamical systems
- Polynomial dynamical systems, reaction networks, and toric differential inclusions
- Robust persistence and permanence of polynomial and power law dynamical systems
- Structure and stability of certain chemical networks and applications to the kinetic proofreading model of T-cell receptor signal transduction
- The dynamics of weakly reversible population processes near facets
- Toric dynamical systems
Cited in
(22)- Quasi-toric differential inclusions
- Minimal invariant regions and minimal globally attracting regions for toric differential inclusions
- Minimal invariant regions and minimal globally attracting regions for variable-k reaction systems
- Autocatalytic recombination systems: a reaction network perspective
- Tier structure of strongly endotactic reaction networks
- A geometric approach to the global attractor conjecture
- The dynamics of weakly reversible population processes near facets
- A projection argument for differential inclusions, with applications to persistence of mass-action kinetics
- Persistence and permanence of mass-action and power-law dynamical systems
- Polynomial dynamical systems, reaction networks, and toric differential inclusions
- The Disguised Toric Locus and Affine Equivalence of Reaction Networks
- Source-Only Realizations, Weakly Reversible Deficiency One Networks, and Dynamical Equivalence
- On the connectivity of the disguised toric locus of a reaction network
- Endotactic and strongly endotactic networks with infinitely many positive steady states
- A lower bound on the dimension of the \(\mathbb{R}\)-disguised toric locus of a reaction network
- Infinitesimal homeostasis in mass-action systems
- The boundary reproduction number for determining boundary steady state stability in chemical reaction systems
- Realizations through weakly reversible networks and the globally attracting locus
- The dimension of the disguised toric locus of a reaction network
- The disguised toric locus of a reaction network: simple conditions for codimension zero
- Decomposable and essentially univariate mass-action systems: extensions of the deficiency one theorem
- A computational approach to persistence, permanence, and endotacticity of biochemical reaction systems
This page was built for publication: Endotactic Networks and Toric Differential Inclusions
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q4964243)
