Cycle structure in SR and DSR graphs: Implications for multiple equilibria and stable oscillation in chemical reaction networks

DOI10.1007/978-3-642-29072-5_1MaRDI QIDQ2889607zbMATH OpenOpenAlexFDO

Authors Murad Banaji

Publication date 8 June 2012

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1005.5472

zbMATH Keywords

chemical reaction networksSR graphDSR graph

Mathematics Subject Classification ID

Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85) Classical flows, reactions, etc. in chemistry (92E20)

Abstract: Associated with a chemical reaction network is a natural labelled bipartite multigraph termed an SR graph, and its directed version, the DSR graph. These objects are closely related to Petri nets. The construction of SR and DSR graphs for chemical reaction networks is presented. Conclusions about asymptotic behaviour of the associated dynamical systems which can be drawn easily from the graphs are discussed. In particular, theorems on ruling out the possibility of multiple equilibria or stable oscillation in chemical reaction networks based on computations on SR/DSR graphs are presented. These include both published and new results. The power and limitations of such results are illustrated via several examples.

Recommendations

• Multiple Equilibria in Complex Chemical Reaction Networks: II. The Species-Reaction Graph
• Graph-theoretic methods for the analysis of chemical and biochemical networks. I. Multistability and oscillations in ordinary differential equation models
• Graph-theoretic approaches to injectivity and multiple equilibria in systems of interacting elements
• The interaction graph structure of mass-action reaction networks
• Multiple Equilibria in Complex Chemical Reaction Networks: I. The Injectivity Property

Cited in

(9)

• A graph-theoretic condition for delay stability of reaction systems
• Multiple Equilibria in Complex Chemical Reaction Networks: II. The Species-Reaction Graph
• The smallest bimolecular mass action reaction networks admitting Andronov–Hopf bifurcation
• A unified view on bipartite species-reaction graphs and their relation to interaction graphs and qualitative dynamics of chemical reaction networks
• A stronger necessary condition for the multistationarity of chemical reaction networks
• The interaction graph structure of mass-action reaction networks
• scientific article; zbMATH DE number 4122019 (Why is no real title available?)
• Delay stability of reaction systems
• An efficient characterization of complex-balanced, detailed-balanced, and weakly reversible systems

This page was built for publication: Cycle structure in SR and DSR graphs: Implications for multiple equilibria and stable oscillation in chemical reaction networks

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2889607)