The interaction graph structure of mass-action reaction networks

DOI10.1007/S00285-011-0462-0MaRDI QIDQ455747zbMATH OpenOpenAlexWikidataFDO

Authors Mirela Domijan, E. Pécou

Publication date 22 October 2012

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00285-011-0462-0

zbMATH Keywords

interaction graphoscillationsJacobian matrixfeedback circuitsmultistationarity

Mathematics Subject Classification ID

Systems biology, networks (92C42) Small world graphs, complex networks (graph-theoretic aspects) (05C82) Nonlinear oscillations and coupled oscillators for ordinary differential equations (34C15)

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Cites work

• scientific article; zbMATH DE number 3771418 (Why is no real title available?)
• scientific article; zbMATH DE number 819507 (Why is no real title available?)
• DETERMINISTIC CHAOS SEEN IN TERMS OF FEEDBACK CIRCUITS: ANALYSIS, SYNTHESIS, "LABYRINTH CHAOS"
• Graph-theoretic methods for the analysis of chemical and biochemical networks. I. Multistability and oscillations in ordinary differential equation models
• Mathematical physiology
• Multiple Equilibria in Complex Chemical Reaction Networks: II. The Species-Reaction Graph
• Necessary conditions for multistationarity and stable periodicity
• On the existence of oscillatory solutions in negative feedback cellular control processes
• Positive and negative circuits in dynamical systems
• The kinetics of enzyme systems involving activation of zymogens
• The qualitative dynamics of a class of biochemical control circuits

Cited in

(11)

• Inducing chaos in a gene regulatory network by coupling an oscillating dynamics with a hysteresis-type one
• A unified view on bipartite species-reaction graphs and their relation to interaction graphs and qualitative dynamics of chemical reaction networks
• Structural analysis in biology: a control-theoretic approach
• Graph-theoretic methods for the analysis of chemical and biochemical networks. I. Multistability and oscillations in ordinary differential equation models
• Unifying matrix stability concepts with a view to applications
• Graph theory and qualitative analysis of reaction networks
• Vertex results for the robust analysis of uncertain biochemical systems
• Cyclic negative feedback systems: what is the chance of oscillation?
• State-dependent effective interactions in oscillator networks through coupling functions with dead zones
• Cycle structure in SR and DSR graphs: Implications for multiple equilibria and stable oscillation in chemical reaction networks
• Computing the structural influence matrix for biological systems

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