Disguised toric dynamical systems

DOI10.1016/J.JPAA.2022.107035MaRDI QIDQ2134666zbMATH OpenOpenAlexFDO

Authors Laura Brustenga i Moncusí, Miruna-Ştefana Sorea, Gheorghe Craciun

Publication date 3 May 2022

Published in Journal of Pure and Applied Algebra (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/2006.01289

zbMATH Keywords

Euclidean embedded graphreaction networktoric system

Mathematics Subject Classification ID

Real algebraic sets (14P05) Semialgebraic sets and related spaces (14P10) Computational real algebraic geometry (14Q30) Ordinary differential equations and connections with real algebraic geometry (fewnomials, desingularization, zeros of abelian integrals, etc.) (34C08) Global stability of solutions to ordinary differential equations (34D23) Low-dimensional dynamical systems (37E99)

Abstract: We study families of polynomial dynamical systems inspired by biochemical reaction networks. We focus on complex balanced mass-action systems, which have also been called toric. They are known or conjectured to enjoy very strong dynamical properties, such as existence and uniqueness of positive steady states, local and global stability, persistence, and permanence. We consider the class of disguised toric dynamical systems, which contains toric dynamical systems, and to which all dynamical properties mentioned above extend naturally. By means of (real) algebraic geometry we show that some reaction networks have an empty toric locus or a toric locus of Lebesgue measure zero in parameter space, while their disguised toric locus is of positive measure. We also propose some algorithms one can use to detect the disguised toric locus.

Review text

A Euclidean embedded graph (or \(E\)-graph for short) is a digraph (directed graph) \(G=(V,E)\), where \(V\) is the set of vertices, \(E\) is the set of edges with no self-loops and at most one edge between a pair of ordered vertices. The authors consider biochemical reaction networks as \(E\)-graphs (where \(E\) is the set of reactions) and families of polynomial dynamical systems inspired by them. They focus on toric (i.~e. complex balanced mass-action) systems. These systems are known or conjectured to enjoy very strong dynamical properties, such as existence and uniqueness of positive steady states, local and global stability, persistence, and permanence. The authors consider the class of disguised toric dynamical systems, which contains toric dynamical systems, and to which all dynamical properties mentioned above extend naturally. By means of (real) algebraic geometry they show that some reaction networks have an empty toric locus or a toric locus of Lebesgue measure zero in the parameter space, while their disguised toric locus is of positive measure. They also propose some algorithms one can use to detect the disguised toric locus.

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Cited in

(13)

• Quasi-toric differential inclusions
• Families of toric chemical reaction networks
• Complexity of model testing for dynamical systems with toric steady states
• Polynomial dynamical systems, reaction networks, and toric differential inclusions
• The Disguised Toric Locus and Affine Equivalence of Reaction Networks
• On the connectivity of the disguised toric locus of a reaction network
• A lower bound on the dimension of the \(\mathbb{R}\)-disguised toric locus of a reaction network
• The structure of the toric locus of a reaction network
• Realizations through weakly reversible networks and the globally attracting locus
• Maximum likelihood estimation of log-affine models using detailed-balanced reaction networks
• The dimension of the disguised toric locus of a reaction network
• The disguised toric locus of a reaction network: simple conditions for codimension zero
• Toric dynamical systems

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