Critical parameters for singular perturbation reductions of chemical reaction networks
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Publication:2171046
Abstract: We are concerned with polynomial ordinary differential systems that arise from modelling chemical reaction networks. For such systems, which may be of high dimension and may depend on many parameters, it is frequently of interest to obtain a reduction of dimension in certain parameter ranges. Singular perturbation theory, as initiated by Tikhonov and Fenichel, provides a path toward such reductions. In the present paper we discuss parameter values that lead to singular perturbation reductions (so-called Tikhonov-Fenichel parameter values, or TFPVs). An algorithmic approach is known, but it is feasible for small dimensions only. Here we characterize conditions for classes of reaction networks for which TFPVs arise by turning off reactions (by setting rate parameters to zero), or by removing certain species (which relates to the classical quasi-steady state approach to model reduction). In particular, we obtain definitive results for the class of complex balanced reaction networks (of deficiency zero) and first order reaction networks.
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Cites work
- A constructive approach to quasi-steady state reductions
- A proof of unlimited multistability for phosphorylation cycles
- A survey of methods for deciding whether a reaction network is multistationary
- Chemical mechanism structure and the coincidence of the stoichiometric and kinetie subspaces
- Chemical reaction systems with toric steady states
- Classical quasi-steady state reduction -- a mathematical characterization
- Computing quasi-steady state reductions
- Coordinate-independent criteria for Hopf bifurcations
- Determining ``small parameters for quasi-steady state
- DIFFERENTIAL EQUATIONS ON GRAPHS
- Foundations of chemical reaction network theory
- Geometric singular perturbation theory for ordinary differential equations
- Graph-theoretic approaches to injectivity and multiple equilibria in systems of interacting elements
- Graph-theoretic criteria for injectivity and unique equilibria in general chemical reaction systems
- How far is complex balancing from detailed balancing?
- scientific article; zbMATH DE number 44637 (Why is no real title available?)
- scientific article; zbMATH DE number 734901 (Why is no real title available?)
- scientific article; zbMATH DE number 3805315 (Why is no real title available?)
- scientific article; zbMATH DE number 3047763 (Why is no real title available?)
- scientific article; zbMATH DE number 3075094 (Why is no real title available?)
- Ideals, varieties, and algorithms. An introduction to computational algebraic geometry and commutative algebra
- Laplacian dynamics on general graphs
- Local and global robustness at steady state
- Mathematical physiology. I: Cellular physiology
- Matrix tree theorems
- Model reduction by extended quasi-steady-state approximation
- Multiple Equilibria in Complex Chemical Reaction Networks: I. The Injectivity Property
- Node balanced steady states: unifying and generalizing complex and detailed balanced steady states
- Nonnegative Linear Elimination for Chemical Reaction Networks
- Notes on linear inequalities. I: The intersection of the non-negative orthant with complementary orthogonal subspaces
- On the number of steady states in a multiple futile cycle
- Preclusion of switch behavior in networks with mass-action kinetics
- Qualitative Theory of Compartmental Systems
- Quasi-steady-state approximation in the mathematical modeling of biochemical reaction networks
- Reduction and asymptotic reduction of reaction equations
- Sign conditions for injectivity of generalized polynomial maps with applications to chemical reaction networks and real algebraic geometry
- Singular perturbations and scaling
- The Quasi-Steady-State Assumption: A Case Study in Perturbation
- Tikhonov-Fenichel reduction for parameterized critical manifolds with applications to chemical reaction networks
- Toric dynamical systems
- Variable elimination in chemical reaction networks with mass-action kinetics
- Weakly reversible mass-action systems with infinitely many positive steady states
Cited in
(6)- Singular perturbation analysis for the reduction of complex chemistry in gaseous mixtures using the entropic structure.
- Analysis of the computational singular perturbation reduction method for chemical kinetics
- Tikhonov-Fenichel reduction for parameterized critical manifolds with applications to chemical reaction networks
- Singular perturbations and scaling
- Reduction and asymptotic reduction of reaction equations
- Natural parameter conditions for singular perturbations of chemical and biochemical reaction networks
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