Nonnegative Linear Elimination for Chemical Reaction Networks
From MaRDI portal
Publication:5205261
Abstract: We consider linear elimination of variables in steady state equations of a chemical reaction network. Particular subsets of variables corresponding to sets of so-called reactant-noninteracting species, are introduced. The steady state equations for the variables in such a set, taken together with potential linear conservation laws in the variables, define a linear system of equations. We give conditions that guarantee that the solution to this system is nonnegative, provided it is unique. The results are framed in terms of spanning forests of a particular multidigraph derived from the reaction network and thereby conditions for uniqueness and nonnegativity of a solution are derived by means of the multidigraph. Though our motivation comes from applications in systems biology, the results have general applicability in applied sciences.
Recommendations
- Linear elimination in chemical reaction networks
- Linear conjugacy of chemical reaction networks
- Variable elimination in chemical reaction networks with mass-action kinetics
- Model reduction of chemical reaction systems using elimination
- Solving moment hierarchies for chemical reaction networks
- Piecewise linear and Boolean models of chemical reaction networks
- Model complexity reduction of chemical reaction networks using mixed-integer quadratic programming
- A linear programming approach to weak reversibility and linear conjugacy of chemical reaction networks
- Fast enumeration of non-isomorphic chemical reaction networks
- Graphical reduction of reaction networks by linear elimination of species
Cites work
- Chemical reaction systems with toric steady states
- Generalized mass action systems: complex balancing equilibria and sign vectors of the stoichiometric and kinetic-order subspaces
- Graphical criteria for positive solutions to linear systems
- Graphical reduction of reaction networks by linear elimination of species
- Power-law kinetics and determinant criteria for the preclusion of multistationarity in networks of interacting species
- The existence and uniqueness of steady states for a class of chemical reaction networks
- The rational parameterisation theorem for multisite post-translational modification systems
- Toric dynamical systems
- Variable elimination in chemical reaction networks with mass-action kinetics
- Variable elimination in post-translational modification reaction networks with mass-action kinetics
Cited in
(12)- Variable elimination in post-translational modification reaction networks with mass-action kinetics
- Conditions for extinction events in chemical reaction networks with discrete state spaces
- Linear elimination in chemical reaction networks
- Computing complex chemical equilibria by generalized linear programming
- Graphical criteria for positive solutions to linear systems
- Critical parameters for singular perturbation reductions of chemical reaction networks
- Conservation laws in biochemical reaction networks
- Variable elimination in chemical reaction networks with mass-action kinetics
- How to generate species with positive concentrations for all positive times?
- Symbolic Proof of Bistability in Reaction Networks
- Neville elimination: An efficient algorithm with application to chemistry
- A computational approach to extinction events in chemical reaction networks with discrete state spaces
This page was built for publication: Nonnegative Linear Elimination for Chemical Reaction Networks
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q5205261)