Model complexity reduction of chemical reaction networks using mixed-integer quadratic programming

DOI10.1016/J.CAMWA.2012.11.024MaRDI QIDQ2629464zbMATH OpenOpenAlexFDO

Authors Ralf Hannemann-Tamás, Attila Gábor, Katalin Hangos, Gábor Szederkényi

Publication date 6 July 2016

Published in Computers & Mathematics with Applications (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.camwa.2012.11.024

zbMATH Keywords

chemical reaction networksmixed-integer quadratic programmingmodel reductionsensitivity analysis

Mathematics Subject Classification ID

Chemical kinetics in thermodynamics and heat transfer (80A30) Classical flows, reactions, etc. in chemistry (92E20)

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Cites work

• A subspace approach to balanced truncation for model reduction of nonlinear control systems
• A tutorial on chemical reaction network dynamics
• Complexity reduction preserving dynamical behavior of biochemical networks
• Engineering model reduction and entropy-based Lyapunov functions in chemical reaction kinetics
• scientific article; zbMATH DE number 4068629 (Why is no real title available?)
• scientific article; zbMATH DE number 44637 (Why is no real title available?)
• LAPACK Users' Guide
• Model decomposition and reduction tools for large-scale networks in systems biology
• Modeling and analysis of mass-action kinetics
• The art of differentiating computer programs. An introduction to algorithmic differentiation.
• The Effect of Lumping and Expanding on Kinetic Differential Equations

Cited in

(12)

• Mechanism reduction of chemical reaction based on sensitivity analysis: development and testing of some new procedure
• Data-driven, variational model reduction of high-dimensional reaction networks
• Optimization models for reaction networks: information divergence, quadratic programming and Kirchhoff's laws
• Methods of model reduction for large-scale biological systems: a survey of current methods and trends
• Reduction of a kinetic model of active export of importins
• Editorial: Grasping complexity
• Handling biological complexity using Kron reduction
• Model reduction in chemical process optimization
• Nonnegative Linear Elimination for Chemical Reaction Networks
• Inference of chemical reaction networks based on concentration profiles using an optimization framework
• Novel trajectory based concepts for model and complexity reduction in (bio) chemical kinetics
• scientific article; zbMATH DE number 970272 (Why is no real title available?)

Describes a project that uses

Uses Software

• dcc
• LAPACK
• AMPL
• CPLEX

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