Handling biological complexity using Kron reduction

DOI10.1007/978-3-319-20988-3_5MaRDI QIDQ4558868zbMATH OpenOpenAlexFDO

Authors Bayu Jayawardhana, Shodhan Rao, Ward Sikkema, Barbara M. Bakker

Publication date 30 November 2018

Published in Mathematical Control Theory I (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-319-20988-3_5

zbMATH Keywords

chemical reaction networksgraph of complexesKron reductionmodel reduction

Mathematics Subject Classification ID

Applications of graph theory (05C90) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) System structure simplification (93B11) Control/observation systems governed by ordinary differential equations (93C15)

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Cites work

• A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks
• A local search approximation algorithm for \(k\)-means clustering
• A port-Hamiltonian formulation of open chemical reaction networks
• An intrinsic Hamiltonian formulation of network dynamics: Non-standard Poisson structures and gyrators
• An intrinsic Hamiltonian formulation of the dynamics of LC-circuits
• Characterization and partial synthesis of the behavior of resistive circuits at their terminals
• Global stability of complex balanced mechanisms
• scientific article; zbMATH DE number 683451 (Why is no real title available?)
• scientific article; zbMATH DE number 1179517 (Why is no real title available?)
• scientific article; zbMATH DE number 3035866 (Why is no real title available?)
• Interlacing eigenvalues and graphs
• Kron Reduction of Graphs With Applications to Electrical Networks
• L\(_2\) gain and passivity techniques in nonlinear control.
• On the mathematical structure of balanced chemical reaction networks governed by mass action kinetics
• Port-Hamiltonian systems theory: an introductory overview

Cited in

(10)

• Guaranteed error bounds for structured complexity reduction of biochemical networks
• A large-scale assessment of exact lumping of quantitative models in the biomodels repository
• A large-scale assessment of exact model reduction in the biomodels repository
• A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks
• Model complexity reduction of chemical reaction networks using mixed-integer quadratic programming
• Combining model reductions
• Towards Kron reduction of generalized electrical networks
• Structure-preserving model reduction of physical network systems
• scientific article; zbMATH DE number 3892989 (Why is no real title available?)
• Graph-based, dynamics-preserving reduction of (bio)chemical systems

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