Siphons in chemical reaction networks

DOI10.1007/s11538-010-9502-yzbMath1198.92020arXiv0904.4529OpenAlexW2116591110WikidataQ46237093 ScholiaQ46237093MaRDI QIDQ711493

Bernd Sturmfels, Anne Shiu

Publication date: 26 October 2010

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0904.4529

zbMATH Keywords

decompositionmonomial idealbinomial idealsteady statechemical reaction systemssiphon

Mathematics Subject Classification ID

Classical flows, reactions, etc. in chemistry (92E20) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Algorithms in computer science (68W99)

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Uses Software

• Macaulay2
• polymake
• Binomials.m2

Cites Work

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• Toric dynamical systems
• The slice algorithm for irreducible decomposition of monomial ideals
• Algebraic methods for inferring biochemical networks: a maximum likelihood approach
• Binomial ideals
• Combinatorics of binomial primary decomposition
• Translation-invariant monotone systems, and a global convergence result for enzymatic futile cycles
• A Petri net approach to the study of persistence in chemical reaction networks
• Global Asymptotic Stability for a Class of Nonlinear Chemical Equations
• Decompositions of binomial ideals
• Global stability of complex balanced mechanisms

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