Toric ideals and graph theory to analyze Hopf bifurcations in mass action systems

DOI10.1016/j.jsc.2005.07.002zbMath1120.13033OpenAlexW1970573500MaRDI QIDQ2456612

Karin Gatermann, Anke Sensse, Markus Eiswirth

Publication date: 19 October 2007

Published in: Journal of Symbolic Computation (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jsc.2005.07.002

zbMATH Keywords

chemical kineticsalgebraic geometrystoichiometric network analysis

Mathematics Subject Classification ID

Symbolic computation and algebraic computation (68W30) Toric varieties, Newton polyhedra, Okounkov bodies (14M25) Classical flows, reactions, etc. in chemistry (92E20) Bifurcation theory for ordinary differential equations (34C23) Gröbner bases; other bases for ideals and modules (e.g., Janet and border bases) (13P10) Graphs and linear algebra (matrices, eigenvalues, etc.) (05C50) Chemical kinetics in thermodynamics and heat transfer (80A30) Bifurcations of limit cycles and periodic orbits in dynamical systems (37G15)

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Uses Software

• CoCoA
• polymake
• SINGULAR
• Sostools
• toric.lib
• TiGERS
• FluxAnalyzer

Cites Work

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