Hybrid representation and simulation of stiff biochemical networks

DOI10.1016/j.nahs.2012.05.004zbMath1269.93061WikidataQ63241798 ScholiaQ63241798MaRDI QIDQ360624

Monika Heiner, Mostafa Herajy

Publication date: 27 August 2013

Published in: Nonlinear Analysis. Hybrid Systems (Search for Journal in Brave)

Full work available at URL: http://www.sciencedirect.com/science/article/pii/S1751570X12000192

zbMATH Keywords

hybrid simulation; dynamic partitioning; generalised hybrid Petri nets; stiff biochemical networks

Mathematics Subject Classification ID

93C40: Adaptive control/observation systems

93C65: Discrete event control/observation systems

Related Items

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Uses Software

• SUNDIALS
• SNOOPY

Cites Work

• SUNDIALS
• Formal methods for computational systems biology. 8th international school on formal methods for the design of computer, communication, and software systems, SFM 2008 Bertinoro, Italy, June 2--7, 2008. Advanced lectures
• Hybrid method for the chemical master equation
• From Petri Nets to Differential Equations – An Integrative Approach for Biochemical Network Analysis
• Extended Stochastic Petri Nets for Model-Based Design of Wetlab Experiments
• Differential Petri nets: representing continuous systems in a discrete-event world
• Adaptive simulation of hybrid stochastic and deterministic models for biochemical systems