Hybrid representation and simulation of stiff biochemical networks
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Publication:360624
DOI10.1016/J.NAHS.2012.05.004zbMATH Open1269.93061OpenAlexW1974161639WikidataQ63241798 ScholiaQ63241798MaRDI QIDQ360624FDOQ360624
Authors: Mostafa Herajy, Monika Heiner 
Publication date: 27 August 2013
Published in: Nonlinear Analysis. Hybrid Systems (Search for Journal in Brave)
Full work available at URL: http://www.sciencedirect.com/science/article/pii/S1751570X12000192
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Cites Work
- SUNDIALS
- Formal methods for computational systems biology. 8th international school on formal methods for the design of computer, communication, and software systems, SFM 2008 Bertinoro, Italy, June 2--7, 2008. Advanced lectures
- Extended Stochastic Petri Nets for Model-Based Design of Wetlab Experiments
- From Petri Nets to Differential Equations – An Integrative Approach for Biochemical Network Analysis
- Hybrid method for the chemical master equation
- Differential Petri nets: representing continuous systems in a discrete-event world
- Adaptive simulation of hybrid stochastic and deterministic models for biochemical systems
Cited In (15)
- A critical comparison of rejection-based algorithms for simulation of large biochemical reaction networks
- HRSSA - efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks
- Analytic solutions for stochastic hybrid models of gene regulatory networks
- Colouring fuzziness for systems biology
- Hybrid semantics for Bio-PEPA
- Computational and experimental approaches to determining the structure and interaction potentials of prototypical biological systems
- Title not available (Why is that?)
- Implementing biological hybrid systems: allowing composition and avoiding stiffness
- Title not available (Why is that?)
- Efficient modelling of yeast cell cycles based on multisite phosphorylation using coloured hybrid Petri nets with marking-dependent arc weights
- Accelerated simulation of hybrid biological models with quasi-disjoint deterministic and stochastic subnets
- Adaptive simulation of hybrid stochastic and deterministic models for biochemical systems
- Title not available (Why is that?)
- HSimulator: hybrid stochastic/deterministic simulation of biochemical reaction networks
- Stochastic hybrid models of gene regulatory networks -- a PDE approach
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