KEGG
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Cited in
(only showing first 100 items - show all)- A model selection criterion for model-based clustering of annotated gene expression data
- Using Wald-type estimator to combat outliers and Berkson-type uncertainties with mixture distributions in linear regression models
- Signaling perturbations induced by invading \textit{H. pylori} proteins in the host epithelial cells: a mathematical modeling approach
- Coping with dynamical reaction system topologies using deterministic P modules: a case study of photosynthesis
- A regularization-based adaptive test for high-dimensional GLMs
- Calculating the Statistical Significance of Changes in Pathway Activity From Gene Expression Data
- Molecular codes in large metabolic networks
- Gene regulatory networks. Methods and protocols
- The correlation of gene expression and co-regulated gene patterns in characteristic KEGG pathways
- Joint mean-covariance estimation via the horseshoe
- More power via graph-structured tests for differential expression of gene networks
- New Trends in the Analysis of Functional Genomic Data
- Natalie 2.0: sparse global network alignment as a special case of quadratic assignment
- Exact solution of the 2-dimensional grid arrangement problem
- Distributed and sequential algorithms for bioinformatics
- A statistical framework for pathway and gene identification from integrative analysis
- Inferring dynamic gene regulatory networks with low-order conditional independencies -- an evaluation of the method
- Reconstruction of a directed acyclic graph with intervention
- scientific article; zbMATH DE number 6431336 (Why is no real title available?)
- Combining gene expression data and prior knowledge for inferring gene regulatory networks via Bayesian networks using structural restrictions
- miRNA-target gene regulatory networks: a Bayesian integrative approach to biomarker selection with application to kidney cancer
- Ridge estimation of inverse covariance matrices from high-dimensional data
- Bayesian genomic models for the incorporation of pathway topology knowledge into association studies
- Variable selection and joint estimation of mean and covariance models with an application to eQTL data
- Constrained target controllability of complex networks
- Periodic solutions of some polynomial differential systems in dimension 3 via averaging theory
- Finding MEMo: minimum sets of elementary flux modes
- A very fast algorithm for matrix factorization
- A general family of trimmed estimators for robust high-dimensional data analysis
- A large-scale assessment of exact lumping of quantitative models in the biomodels repository
- A statistical mechanics description of environmental variability in metabolic networks
- Computational cell biology. Methods and protocols
- Penalized model-based clustering
- PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks
- Is the cell \textit{really} a machine?
- Jackknife model averaging prediction methods for complex phenotypes with gene expression levels by integrating external pathway information
- Deep reservoir neural networks for trees
- Network distances for weighted digraphs
- Data mining in bioinformatics
- Review on statistical methods for gene network reconstruction using expression data
- Oracle inequalities for weighted group Lasso in high-dimensional misspecified Cox models
- A multiscale agent-based model for the investigation of E. coli K12 metabolic response during biofilm formation
- Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks
- Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings
- Refining cellular pathway models using an ensemble of heterogeneous data sources
- Springer Handbook of Bio-/Neuroinformatics
- The \textsc{SDEval} benchmarking toolkit
- Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
- Formal biochemical space with semantics in Kappa and BNGL
- Counting substrate cycles in topologically restricted metabolic networks
- An integrative pathway-based clinical-genomic model for cancer survival prediction
- Biological pathway selection through Bayesian integrative modeling
- Covariate-adjusted inference for differential analysis of high-dimensional networks
- Tracing molecular properties throughout evolution: a chemoinformatic approach
- Inference and characterization of multi-attribute networks with application to computational biology
- A graphical model method for integrating multiple sources of genome-scale data
- Study of triplet periodicity differences inside and between genomes
- Identifying Disease Modules Based on Connectivity and Semantic Similarities
- A minimal model for hepatic fatty acid balance during fasting: application to PPAR alpha-deficient mice
- Protein interaction network analysis -- approach for potential drug target identification in \textit{Mycobacterium tuberculosis}
- Mathematical modelling of Her2 (ErbB2) PI3K/AKT signalling pathways during breast carcinogenesis to include PTPD2
- High-dimensional joint estimation of multiple directed Gaussian graphical models
- Embracing the blessing of dimensionality in factor models
- Applications of Page Ranking in P Systems
- OnGraX: a web-based system for the collaborative visual analysis of graphs
- The codon information index: a quantitative measure of the information provided by the codon bias
- Statistical genomics. Methods and protocols
- Finding gastric cancer related genes and clinical biomarkers for detection based on gene-gene interaction network
- Ranking relations using analogies in biological and information networks
- Recent developments in parameter estimation and structure identification of biochemical and genomic systems
- Classification tree algorithm for grouped variables
- Qualitative analysis of gene regulatory networks by temporal logic
- Graph theoretic concepts in the study of biological networks
- Asymptotically independent U-statistics in high-dimensional testing
- Cliques with maximum/minimum edge neighborhood and neighborhood density
- Application of abductive ILP to learning metabolic network inhibition from temporal data
- Stochastic model of homogeneous coding and latent periodicity in DNA sequences
- A hierarchical semiparametric model for incorporating intergene information for analysis of genomic data
- The community structure of human cellular signaling network
- Identification of alterations in the Jacobian of biochemical reaction networks from steady state covariance data at two conditions
- Cross-species network and transcript transfer
- Variable Selection in Penalized Model‐Based Clustering Via Regularization on Grouped Parameters
- Variable selection in partially linear additive hazards model with grouped covariates and a diverging number of parameters
- Incorporating Gene Ontology Information in Gene Expression Data Clustering Using Multiobjective Evolutionary Optimization: Application in Yeast Cell Cycle Data
- A GS-CORE algorithm for performing a reduction test on multiple gene sets and their core genes
- scientific article; zbMATH DE number 1950554 (Why is no real title available?)
- Distributional logic programming for Bayesian knowledge representation
- Transcriptograms: A Genome-Wide Gene Expression Analysis Method
- A link-free sparse group variable selection method for single-index model
- RNA bioinformatics
- Network modeling in biology: statistical methods for gene and brain networks
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- Computational challenges in systems biology
- CMBSlib
- InterViewer
- MergeMaid
- Bio-PEPA
- IntelliGEN
- SCAMP
- STAR
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