KEGG
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Cited in
(only showing first 100 items - show all)- Semi-supervised graph clustering: a kernel approach
- Efficient reconstruction of metabolic pathways by bidirectional chemical search
- Stabilizing variable selection and regression
- Updating of the Gaussian graphical model through targeted penalized estimation
- The Generalized Ridge Estimator of the Inverse Covariance Matrix
- CMBSlib
- InterViewer
- ProTranslator
- DIAMOnD
- causal-learn
- BCDAG
- DESeq2
- TGCnA
- intePareto
- TOrPEDO
- MTeQTLResults
- MergeMaid
- Ridge estimation of the VAR(1) model and its time series chain graph from multivariate time-course omics data
- Bio-PEPA
- IntelliGEN
- SCAMP
- STAR
- A general family of trimmed estimators for robust high-dimensional data analysis
- A multiscale agent-based model for the investigation of E. coli K12 metabolic response during biofilm formation
- Refining cellular pathway models using an ensemble of heterogeneous data sources
- Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks
- Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings
- A minimal model for hepatic fatty acid balance during fasting: application to PPAR alpha-deficient mice
- Protein interaction network analysis -- approach for potential drug target identification in \textit{Mycobacterium tuberculosis}
- On application of directons to functional classification of genes in prokaryotes
- Bioconductor
- PetriNets
- SNOOPY
- Ridge estimation of inverse covariance matrices from high-dimensional data
- A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models
- Distance-correlation based gene set analysis in longitudinal studies
- A statistical method for measuring activation of gene regulatory networks
- DriverFinder: a gene length-based network method to identify cancer driver genes
- HAPLO
- Rfam
- Rnamotif
- Bioinformatics. Volume II: structure, function, and applications
- A systems biology approach to understanding alcoholic liver disease molecular mechanism: the development of static and dynamic models
- SDTRLS: predicting drug-target interactions for complex diseases based on chemical substructures
- A bi-objective network design approach for discovering functional modules linking Golgi apparatus fragmentation and neuronal death
- Pathway-based kernel boosting for the analysis of genome-wide association studies
- Comparative genomics study of \textit{Salmonella Typhimurium} LT2 for the identification of putative therapeutic candidates
- CFSBoost: cumulative feature subspace boosting for drug-target interaction prediction
- Receptor cross-talk in angiogenesis: mapping environmental cues to cell phenotype using a stochastic, Boolean signaling network model
- Organising metabolic networks: cycles in flux distributions
- Gene regulatory networks. Methods and protocols
- Computational cell biology. Methods and protocols
- The correlation of gene expression and co-regulated gene patterns in characteristic KEGG pathways
- Variable selection and joint estimation of mean and covariance models with an application to eQTL data
- Natalie 2.0: sparse global network alignment as a special case of quadratic assignment
- Formal biochemical space with semantics in Kappa and BNGL
- Petri net models for the semi-automatic construction of large scale biological networks
- Cliques with maximum/minimum edge neighborhood and neighborhood density
- A new geometric biclustering algorithm based on the Hough transform for analysis of large-scale microarray data
- Computational studies on Alzheimer's disease associated pathways and regulatory patterns using microarray gene expression and network data: revealed association with aging and other diseases
- Metabolic networks are NP-hard to reconstruct
- oligo
- gcrma
- ALLPATHS
- PoCaB
- Cell Illustrator
- NETWORKINFERENCE
- KEGGgraph
- edgeR
- igraph
- WGCNA
- Exact solution of the 2-dimensional grid arrangement problem
- Identification and functional annotation of genome-wide ER-regulated genes in breast cancer based on ChIP-Seq data
- Stella
- glasso
- BioPath
- Insights into protease sequence similarities by comparing substrate sequences and phylogenetic dynamics
- Coping with dynamical reaction system topologies using deterministic P modules: a case study of photosynthesis
- DOCK
- GEPASI
- E-CELL
- RankProd
- onechannelgui
- Is the cell \textit{really} a machine?
- Jackknife model averaging prediction methods for complex phenotypes with gene expression levels by integrating external pathway information
- Deep reservoir neural networks for trees
- BioBayes
- MFinder
- Counting substrate cycles in topologically restricted metabolic networks
- A statistical mechanics description of environmental variability in metabolic networks
- fdrtool
- NCIgraph
- Joint mean-covariance estimation via the horseshoe
- MetaCyc
- G1DBN
- TRANSPATH
- Variable selection in partially linear additive hazards model with grouped covariates and a diverging number of parameters
- SPINAL
- Natalie
- EBarrays
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