Stochastic model of homogeneous coding and latent periodicity in DNA sequences

DOI10.1016/J.JTBI.2015.11.014MaRDI QIDQ304826zbMATH OpenOpenAlexWikidataFDO

Authors Maria Chaley, Vladimir Kutyrkin

Publication date 26 August 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

Full work available at URL https://doi.org/10.1016/j.jtbi.2015.11.014

zbMATH Keywords

CDSlatent periodicitymodel of profile periodicityspectral-statistical approachstructural-stochastic coding

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

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Cites work

• Model of perfect tandem repeat with random pattern and empirical homogeneity testing poly-criteria for latent periodicity revelation in biological sequences
• Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence
• The spectral envelope and its applications.

Cited in

(10)

• Stochastic models for heterogeneous DNA sequences
• A discrete autoregressive process as a model for short-range correlations in DNA sequences
• Lévy statistics in coding and non-coding nucleotide sequences
• Quantifying local randomness in human DNA and RNA sequences using Erdös motifs
• Study of triplet periodicity differences inside and between genomes
• Model of perfect tandem repeat with random pattern and empirical homogeneity testing poly-criteria for latent periodicity revelation in biological sequences
• Latent periodicity of serine-threonine and tyrosine protein kinases and other protein families
• CROSSOVER FROM WHITE NOISE TO LONG RANGE CORRELATED NOISE IN DNA SEQUENCES AND WRITINGS
• Search of latent periodicity in amino acid sequences by means of genetic algorithm and dynamic programming
• Investigating some attributes of periodicity in DNA sequences via semi-Markov modelling

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