Nucleotide sequences versus Markov models

DOI10.1016/0097-8485(92)80036-YMaRDI QIDQ4014709zbMATH OpenOpenAlexFDO

Authors Pavel Pevzner

Publication date 5 October 1992

Published in Computers & Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/0097-8485(92)80036-y

zbMATH Keywords

dinucleotide distributionsDNA sequencesDNA strand symmetryGenBankMarkov modelsmodular structure of genomesnon-stationarynucleotide compositionnucleotide sequencesstationary

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

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• Global Markov models for eukaryote nucleotide data
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• Car sequencing versus mixed-model sequencing: a computational study
• Some probabilistic results on the nonrandomness of simple sequence repeats in DNA sequences
• Stochastic model of homogeneous coding and latent periodicity in DNA sequences
• A stationary distribution associated to a set of laws whose initial states are grouped into classes. An application in genomics
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