The codon information index: a quantitative measure of the information provided by the codon bias

DOI10.1088/1742-5468/2013/04/P04031zbMATH Open1456.92085OpenAlexW2016532527MaRDI QIDQ3301595FDOQ3301595

Authors: Luca Caniparoli, Michele Vendruscolo, Matteo Marsili 

Publication date: 11 August 2020

Published in: Journal of Statistical Mechanics: Theory and Experiment (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1088/1742-5468/2013/04/p04031

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Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Measures of information, entropy (94A17) Phase transitions (general) in equilibrium statistical mechanics (82B26)

Cites Work

• Optimization by simulated annealing

Cited In (2)

• CodonO: a new informatics method for measuring synonymous codon usage bias within and across genomes
• Mathematical relations between codon bias indexes and their applications

Uses Software

• KEGG
• miRBase
• GOLD

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