Optimality of codon usage in \textit{Escherichia coli} due to load minimization

DOI10.1016/J.JTBI.2005.04.007MaRDI QIDQ2196863zbMATH OpenOpenAlexWikidataFDO

Authors Hamed Shateri Najafabadi, Hani Goodarzi, Noorossadat Torabi

Publication date 3 September 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2005.04.007

zbMATH Keywords

codon usagegenetic codeload minimizationsynonymous codons

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

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Cited in

(8)

• Error compensation of tRNA misacylation by codon-anticodon mismatch prevents translational amino acid misinsertion
• Optimizing the codon usage of synthetic gene with QPSO algorithm
• The impact of codon choice on translation process in \textit{Saccharomyces cerevisiae}: folding class, protein function and secondary structure
• A model of protein translation including codon bias, nonsense errors, and ribosome recycling
• A theoretical analysis of codon adaptation index of the \textit{Boophilus microplus bm86} gene directed to the optimization of a DNA vaccine
• Exploring synonymous codon usage preferences of disulfide-bonded and non-disulfide bonded cysteines in the \textit{E. coli} genome
• The impact of including tRNA content on the optimality of the genetic code
• The codon information index: a quantitative measure of the information provided by the codon bias

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