KEGG

swMATH13866WikidataQ909442 ScholiaQ909442MaRDI QIDQ25777FDOQ25777

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Official website: http://www.genome.jp/kegg/

Cited In (only showing first 100 items - show all)

• Coping with dynamical reaction system topologies using deterministic P modules: a case study of photosynthesis
• Gene regulatory networks. Methods and protocols
• The correlation of gene expression and co-regulated gene patterns in characteristic KEGG pathways
• Natalie 2.0: sparse global network alignment as a special case of quadratic assignment
• A statistical framework for pathway and gene identification from integrative analysis
• miRNA-target gene regulatory networks: a Bayesian integrative approach to biomarker selection with application to kidney cancer
• Variable selection and joint estimation of mean and covariance models with an application to eQTL data
• COXPRESdb
• A general family of trimmed estimators for robust high-dimensional data analysis
• Computational cell biology. Methods and protocols
• Is the cell \textit{really} a machine?
• Jackknife model averaging prediction methods for complex phenotypes with gene expression levels by integrating external pathway information
• Deep reservoir neural networks for trees
• The \textsc{SDEval} benchmarking toolkit
• A multiscale agent-based model for the investigation of E. coli K12 metabolic response during biofilm formation
• Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks
• Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings
• Refining cellular pathway models using an ensemble of heterogeneous data sources
• Formal biochemical space with semantics in Kappa and BNGL
• Counting substrate cycles in topologically restricted metabolic networks
• Tracing molecular properties throughout evolution: a chemoinformatic approach
• A minimal model for hepatic fatty acid balance during fasting: application to PPAR alpha-deficient mice
• Protein interaction network analysis -- approach for potential drug target identification in \textit{Mycobacterium tuberculosis}
• Embracing the blessing of dimensionality in factor models
• Asymptotically independent U-statistics in high-dimensional testing
• Cliques with maximum/minimum edge neighborhood and neighborhood density
• Variable selection in partially linear additive hazards model with grouped covariates and a diverging number of parameters
• Network modeling in biology: statistical methods for gene and brain networks
• TGCnA: temporal gene coexpression network analysis using a low-rank plus sparse framework
• Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis
• A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models
• On the complexity of finding a largest common subtree of bounded degree
• Identification and functional annotation of genome-wide ER-regulated genes in breast cancer based on ChIP-Seq data
• Computational studies on Alzheimer's disease associated pathways and regulatory patterns using microarray gene expression and network data: revealed association with aging and other diseases
• New and improved algorithms for unordered tree inclusion
• Pathway-based kernel boosting for the analysis of genome-wide association studies
• LDAK
• Distance-correlation based gene set analysis in longitudinal studies
• Metabolic networks are NP-hard to reconstruct
• Bioinformatics. Volume II: structure, function, and applications
• A systems biology approach to understanding alcoholic liver disease molecular mechanism: the development of static and dynamic models
• SDTRLS: predicting drug-target interactions for complex diseases based on chemical substructures
• CFSBoost: cumulative feature subspace boosting for drug-target interaction prediction
• Zero-inflated quantile rank-score based test (ZIQRank) with application to scRNA-seq differential gene expression analysis
• A bi-objective network design approach for discovering functional modules linking Golgi apparatus fragmentation and neuronal death
• Rotation gene set testing for longitudinal expression data
• Insights into protease sequence similarities by comparing substrate sequences and phylogenetic dynamics
• Understanding noise in cell signalling in the prospect of drug-targets
• Comparative genomics study of \textit{Salmonella Typhimurium} LT2 for the identification of putative therapeutic candidates
• Receptor cross-talk in angiogenesis: mapping environmental cues to cell phenotype using a stochastic, Boolean signaling network model
• A regularization-based adaptive test for high-dimensional GLMs
• Molecular codes in large metabolic networks
• Joint mean-covariance estimation via the horseshoe
• Title not available (Why is that?)
• Ridge estimation of inverse covariance matrices from high-dimensional data
• Periodic solutions of some polynomial differential systems in dimension 3 via averaging theory
• Penalized model-based clustering
• Review on statistical methods for gene network reconstruction using expression data
• Oracle inequalities for weighted group Lasso in high-dimensional misspecified Cox models
• Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
• High-dimensional joint estimation of multiple directed Gaussian graphical models
• Recent developments in parameter estimation and structure identification of biochemical and genomic systems
• Statistical genomics. Methods and protocols
• Finding gastric cancer related genes and clinical biomarkers for detection based on gene-gene interaction network
• Application of abductive ILP to learning metabolic network inhibition from temporal data
• Stochastic model of homogeneous coding and latent periodicity in DNA sequences
• Variable Selection in Penalized Model‐Based Clustering Via Regularization on Grouped Parameters
• Title not available (Why is that?)
• BRENDA
• Computational challenges in systems biology
• Cell cycle control at the first restriction point and its effect on tissue growth
• Explaining mixture models through semantic pattern mining and banded matrix visualization
• TANDEM
• Orange4WS
• PatchDock
• MetaboAnalyst
• iHOP
• BayesCall
• BING
• DIANA-mirExTra
• FindPeaks
• HMMSplicer
• HPeak
• MiRFinder
• miRanalyzer
• MiPred
• MiRonTop
• miRNAkey
• miRExpress
• mirTools
• mrsFAST
• PatMaN
• ProMiR II
• QSRA
• SHARCGS
• SeqBuster
• TargetSpy
• GeneCards
• Omics Explorer
• Dizzy

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