KEGG

swMATH13866WikidataQ909442 ScholiaQ909442MaRDI QIDQ25777FDOQ25777

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Cited In (only showing first 100 items - show all)

• Gene regulatory networks. Methods and protocols
• The correlation of gene expression and co-regulated gene patterns in characteristic KEGG pathways
• Natalie 2.0: sparse global network alignment as a special case of quadratic assignment
• A statistical framework for pathway and gene identification from integrative analysis
• Inferring dynamic gene regulatory networks with low-order conditional independencies -- an evaluation of the method
• miRNA-target gene regulatory networks: a Bayesian integrative approach to biomarker selection with application to kidney cancer
• Variable selection and joint estimation of mean and covariance models with an application to eQTL data
• A general family of trimmed estimators for robust high-dimensional data analysis
• Network distances for weighted digraphs
• Computational cell biology. Methods and protocols
• A multiscale agent-based model for the investigation of E. coli K12 metabolic response during biofilm formation
• Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks
• Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings
• Refining cellular pathway models using an ensemble of heterogeneous data sources
• Tracing molecular properties throughout evolution: a chemoinformatic approach
• An integrative pathway-based clinical-genomic model for cancer survival prediction
• A minimal model for hepatic fatty acid balance during fasting: application to PPAR alpha-deficient mice
• Protein interaction network analysis -- approach for potential drug target identification in \textit{Mycobacterium tuberculosis}
• Embracing the blessing of dimensionality in factor models
• Ranking relations using analogies in biological and information networks
• The community structure of human cellular signaling network
• A GS-CORE algorithm for performing a reduction test on multiple gene sets and their core genes
• TGCnA: temporal gene coexpression network analysis using a low-rank plus sparse framework
• Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis
• Penalized differential pathway analysis of integrative oncogenomics studies
• Algebraic and topological indices of molecular pathway networks in human cancers
• A Bayesian feature allocation model for tumor heterogeneity
• On application of directons to functional classification of genes in prokaryotes
• A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models
• Efficient reconstruction of metabolic pathways by bidirectional chemical search
• Inferring metabolic networks using the Bayesian adaptive graphical Lasso with informative priors
• Pathway-based kernel boosting for the analysis of genome-wide association studies
• Semantic sensitive tensor factorization
• The Gibbs-plaid biclustering model
• Transcriptomic heterogeneity in cancer as a consequence of dysregulation of the gene-gene interaction network
• A theory of subtree matching and tree kernels based on the edit distance concept
• Distance-correlation based gene set analysis in longitudinal studies
• A new geometric biclustering algorithm based on the Hough transform for analysis of large-scale microarray data
• Biological Networks: Comparison, Conservation, and Evolutionary Trees
• Multi-way blockmodels for analyzing coordinated high-dimensional responses
• A proteome-wide analysis of domain architectures of prokaryotic single-spanning transmembrane proteins
• The spectral condition number plot for regularization parameter evaluation
• Bioinformatics. Volume II: structure, function, and applications
• A statistical method for measuring activation of gene regulatory networks
• A systems biology approach to understanding alcoholic liver disease molecular mechanism: the development of static and dynamic models
• SDTRLS: predicting drug-target interactions for complex diseases based on chemical substructures
• CFSBoost: cumulative feature subspace boosting for drug-target interaction prediction
• Applications of domain-domain interactions in pathway study
• A bi-objective network design approach for discovering functional modules linking Golgi apparatus fragmentation and neuronal death
• Pathway-level disease data mining through hyper-box principles
• TOrPEDO : witnessing model correctness with topological proofs
• Rotation gene set testing for longitudinal expression data
• ProTranslator: zero-shot protein function prediction using textual description
• Comparative genomics study of \textit{Salmonella Typhimurium} LT2 for the identification of putative therapeutic candidates
• Receptor cross-talk in angiogenesis: mapping environmental cues to cell phenotype using a stochastic, Boolean signaling network model
• A regularization-based adaptive test for high-dimensional GLMs
• Molecular codes in large metabolic networks
• Joint mean-covariance estimation via the horseshoe
• Title not available (Why is that?)
• Exact solution of the 2-dimensional grid arrangement problem
• More power via graph-structured tests for differential expression of gene networks
• Distributed and sequential algorithms for bioinformatics
• Ridge estimation of inverse covariance matrices from high-dimensional data
• Bayesian genomic models for the incorporation of pathway topology knowledge into association studies
• Constrained target controllability of complex networks
• Periodic solutions of some polynomial differential systems in dimension 3 via averaging theory
• A very fast algorithm for matrix factorization
• A statistical mechanics description of environmental variability in metabolic networks
• Penalized model-based clustering
• PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks
• Review on statistical methods for gene network reconstruction using expression data
• Data mining in bioinformatics
• Oracle inequalities for weighted group Lasso in high-dimensional misspecified Cox models
• Biological pathway selection through Bayesian integrative modeling
• Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
• Inference and characterization of multi-attribute networks with application to computational biology
• High-dimensional joint estimation of multiple directed Gaussian graphical models
• Recent developments in parameter estimation and structure identification of biochemical and genomic systems
• Statistical genomics. Methods and protocols
• Finding gastric cancer related genes and clinical biomarkers for detection based on gene-gene interaction network
• A hierarchical semiparametric model for incorporating intergene information for analysis of genomic data
• Application of abductive ILP to learning metabolic network inhibition from temporal data
• Stochastic model of homogeneous coding and latent periodicity in DNA sequences
• Variable Selection in Penalized Model‐Based Clustering Via Regularization on Grouped Parameters
• Title not available (Why is that?)
• Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
• Computational challenges in systems biology
• Cell cycle control at the first restriction point and its effect on tissue growth
• Bayesian joint modeling of multiple gene networks and diverse genomic data to identify target genes of a transcription factor
• Semi-supervised graph clustering: a kernel approach
• Textual data compression in computational biology: algorithmic techniques
• Explaining mixture models through semantic pattern mining and banded matrix visualization
• Ridge estimation of the VAR(1) model and its time series chain graph from multivariate time-course omics data
• Improving the structure MCMC sampler for Bayesian networks by introducing a new edge reversal move
• Incorporating Predictor Network in Penalized Regression with Application to Microarray Data
• Abstract interpretation and types for systems biology
• Visualization in Medicine and Life Sciences II. Progress and New Challenges. Selected papers based on the presentations at the second international workshop, VMLS, Bremerhaven, Germany, June 22--24, 2009
• Probabilistic Boolean networks. The modeling and control of gene regulatory networks
• A sparse conditional Gaussian graphical model for analysis of genetical genomics data
• Searching for a source of difference in graphical models

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