KEGG

swMATH13866WikidataQ909442 ScholiaQ909442MaRDI QIDQ25777FDOQ25777

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Cited In (only showing first 100 items - show all)

• Joint mean-covariance estimation via the horseshoe
• Title not available (Why is that?)
• Exact solution of the 2-dimensional grid arrangement problem
• More power via graph-structured tests for differential expression of gene networks
• Algorithms in Computational Molecular Biology
• Distributed and sequential algorithms for bioinformatics
• Ridge estimation of inverse covariance matrices from high-dimensional data
• Bayesian genomic models for the incorporation of pathway topology knowledge into association studies
• Constrained target controllability of complex networks
• Graphical modeling for gene set analysis: A critical appraisal
• Periodic solutions of some polynomial differential systems in dimension 3 via averaging theory
• A very fast algorithm for matrix factorization
• A statistical mechanics description of environmental variability in metabolic networks
• Penalized model-based clustering
• PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks
• Review on statistical methods for gene network reconstruction using expression data
• Data mining in bioinformatics
• Comparing Metabolic Pathways through Reactions and Potential Fluxes
• Oracle inequalities for weighted group Lasso in high-dimensional misspecified Cox models
• Biological pathway selection through Bayesian integrative modeling
• Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
• Inference and characterization of multi-attribute networks with application to computational biology
• High-dimensional joint estimation of multiple directed Gaussian graphical models
• Recent developments in parameter estimation and structure identification of biochemical and genomic systems
• Statistical genomics. Methods and protocols
• Finding gastric cancer related genes and clinical biomarkers for detection based on gene-gene interaction network
• Title not available (Why is that?)
• Application of abductive ILP to learning metabolic network inhibition from temporal data
• Stochastic model of homogeneous coding and latent periodicity in DNA sequences
• Variable Selection in Penalized Model‐Based Clustering Via Regularization on Grouped Parameters
• Title not available (Why is that?)
• Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
• Computational challenges in systems biology
• Cell cycle control at the first restriction point and its effect on tissue growth
• Bayesian joint modeling of multiple gene networks and diverse genomic data to identify target genes of a transcription factor
• Semi-supervised graph clustering: a kernel approach
• Textual data compression in computational biology: algorithmic techniques
• Explaining mixture models through semantic pattern mining and banded matrix visualization
• Title not available (Why is that?)
• Ridge estimation of the VAR(1) model and its time series chain graph from multivariate time-course omics data
• Improving the structure MCMC sampler for Bayesian networks by introducing a new edge reversal move
• Title not available (Why is that?)
• Incorporating Predictor Network in Penalized Regression with Application to Microarray Data
• Title not available (Why is that?)
• Abstract interpretation and types for systems biology
• Visualization in Medicine and Life Sciences II. Progress and New Challenges. Selected papers based on the presentations at the second international workshop, VMLS, Bremerhaven, Germany, June 22--24, 2009
• A sparse conditional Gaussian graphical model for analysis of genetical genomics data
• Searching for a source of difference in graphical models
• Variable selection and regression analysis for graph-structured covariates with an application to genomics
• Reconstructing Gene Regulatory Networks with Bayesian Networks by Combining Expression Data with Multiple Sources of Prior Knowledge
• Finding large average submatrices in high dimensional data
• Stabilizing Variable Selection and Regression
• The Generalized Ridge Estimator of the Inverse Covariance Matrix
• Updating of the Gaussian graphical model through targeted penalized estimation
• Learning Boolean logic models of signaling networks with ASP
• On dynamically generating relevant elementary flux modes in a metabolic network using optimization
• Organising metabolic networks: cycles in flux distributions
• Petri nets for modelling metabolic pathways: a survey
• Error tolerant model for incorporating biological knowledge with expression data in estimating gene networks
• A hidden spatial-temporal Markov random field model for network-based analysis of time course gene expression data
• DriverFinder: a gene length-based network method to identify cancer driver genes
• Network-based penalized regression with application to genomic data
• A multi-functional analyzer uses parameter constraints to improve the efficiency of model-based gene-set analysis
• Data mining of the cancer-related lncRNAs GO terms and KEGG pathways by using mRMR method
• A similarity-based method for prediction of drug side effects with heterogeneous information
• Anesthetic propofol-induced gene expression changes in patients undergoing coronary artery bypass graft surgery based on dynamical differential coexpression network analysis
• A Hierarchical Semiparametric Model for Incorporating Intergene Information for Analysis of Genomic Data
• Incorporating grouping information in Bayesian variable selection with applications in genomics
• Petri net models for the semi-automatic construction of large scale biological networks
• Hypothesizing about signaling networks
• Gene regulatory networks. Methods and protocols
• The correlation of gene expression and co-regulated gene patterns in characteristic KEGG pathways
• Natalie 2.0: sparse global network alignment as a special case of quadratic assignment
• A statistical framework for pathway and gene identification from integrative analysis
• Inferring dynamic gene regulatory networks with low-order conditional independencies -- an evaluation of the method
• Variable selection and joint estimation of mean and covariance models with an application to eQTL data
• A general family of trimmed estimators for robust high-dimensional data analysis
• Computational cell biology. Methods and protocols
• A multiscale agent-based model for the investigation of E. coli K12 metabolic response during biofilm formation
• Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks
• Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings
• Refining cellular pathway models using an ensemble of heterogeneous data sources
• Tracing molecular properties throughout evolution: a chemoinformatic approach
• An integrative pathway-based clinical-genomic model for cancer survival prediction
• A minimal model for hepatic fatty acid balance during fasting: application to PPAR alpha-deficient mice
• Protein interaction network analysis -- approach for potential drug target identification in \textit{Mycobacterium tuberculosis}
• Ranking relations using analogies in biological and information networks
• The community structure of human cellular signaling network
• miRNA–target gene regulatory networks: A Bayesian integrative approach to biomarker selection with application to kidney cancer
• A GS-CORE algorithm for performing a reduction test on multiple gene sets and their core genes
• TGCnA: temporal gene coexpression network analysis using a low-rank plus sparse framework
• Potential drug targets in Mycobacterium tuberculosis through metabolic pathway analysis
• Penalized differential pathway analysis of integrative oncogenomics studies
• Algebraic and topological indices of molecular pathway networks in human cancers
• A Bayesian feature allocation model for tumor heterogeneity
• On application of directons to functional classification of genes in prokaryotes
• A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models
• Efficient reconstruction of metabolic pathways by bidirectional chemical search
• Inferring metabolic networks using the Bayesian adaptive graphical Lasso with informative priors
• Pathway-based kernel boosting for the analysis of genome-wide association studies

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