Recent developments in parameter estimation and structure identification of biochemical and genomic systems
From MaRDI portal
Publication:2270528
DOI10.1016/j.mbs.2009.03.002zbMath1168.92019OpenAlexW2170484057WikidataQ37219400 ScholiaQ37219400MaRDI QIDQ2270528
I-Chun Chou, Eberhard O. (Editor-in-Chief) Voit
Publication date: 28 July 2009
Published in: Mathematical Biosciences (Search for Journal in Brave)
Full work available at URL: http://europepmc.org/articles/pmc2693292
Applications of statistics to biology and medical sciences; meta analysis (62P10) System identification (93B30) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)
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Uses Software
Cites Work
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- Application of Bayesian trained RBF networks to nonlinear time-series modeling
- Mechanistic simulations of inflammation: current state and future prospects
- Equivalence between S-systems and Volterra systems
- Recasting nonlinear differential equations as S-systems: a canonical nonlinear form
- Symmetries of \(S\)-systems
- Causation, prediction, and search
- A practical guide to splines
- Mathematical models of purine metabolism in man
- Box splines
- Lotka-Volterra representation of general nonlinear systems
- Multilayer feedforward networks are universal approximators
- A pharmacodynamic model for the action of the antibiotic imipenem on Pseudomonas aeruginosa populations in vitro
- On selecting models for nonlinear time series
- A grid-oriented genetic algorithm framework for bioinformatics
- Comparative characterization of the fermentation pathway of Saccharomyces cerevisiae using biochemical systems theory and metabolic control analysis: Model definition and nomenclature
- Comparative characterization of the fermentation pathway of Saccharomyces cerevisiae using biochemical systems theory and metabolic control analysis: Steady-state analysis
- Comparative characterization of the fermentation pathway of Saccharomyces cerevisiae using biochemical systems theory and metabolic control analysis: Model validation and dynamic behavior
- Constraints-based models: regulation of gene expression reduces the steady-state solution space
- Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models
- The potential for signal integration and processing in interacting MAP kinase cascades
- Estimating parameters for generalized mass action models using constraint propagation
- Parameter estimation in modulated, unbranched reaction chains within biochemical systems
- Parameter reconstruction for biochemical networks using interval analysis
- Analysis of dynamic labeling data
- On the deduction of chemical reaction pathways from measurements of time series of concentrations
- Design principles for elementary gene circuits: Elements, methods, and examples
- Efficient Solution of Nonlinear Ordinary Differential Equations Expressed in S-system Canonical Form
- TheS-Distribution A Tool for Approximation and Classification of Univariate, Unimodal Probability Distributions
- Numerical Optimization
- Dynamic Trends in Distributions
- Facts, Conjectures, and Improvements for Simulated Annealing
- The S‐Distribution: Approximation of Discrete Distributions
- Evolutionary Multi-Criterion Optimization
- Computer automation of general-to-specific model selection procedures
- A new look at the statistical model identification
