Recent developments in parameter estimation and structure identification of biochemical and genomic systems
DOI10.1016/J.MBS.2009.03.002zbMATH Open1168.92019OpenAlexW2170484057WikidataQ37219400 ScholiaQ37219400MaRDI QIDQ2270528FDOQ2270528
Authors: I-Chun Chou, Eberhard O. (Editor-in-Chief) Voit
Publication date: 28 July 2009
Published in: Mathematical Biosciences (Search for Journal in Brave)
Full work available at URL: http://europepmc.org/articles/pmc2693292
Recommendations
- Inverse problems in systems biology
- Inverse problem studies of biochemical systems with structure identification of S-systems by embedding training functions in a genetic algorithm
- Estimating parameters for generalized mass action models using constraint propagation
- Identifiability of large nonlinear biochemical networks
- Parameter estimation in modulated, unbranched reaction chains within biochemical systems
Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10) System identification (93B30)
Cites Work
- Causation, prediction, and search
- Numerical Optimization
- A new look at the statistical model identification
- Title not available (Why is that?)
- Title not available (Why is that?)
- Title not available (Why is that?)
- Title not available (Why is that?)
- A practical guide to splines
- Box splines
- Mechanistic simulations of inflammation: current state and future prospects
- Multilayer feedforward networks are universal approximators
- Title not available (Why is that?)
- Title not available (Why is that?)
- Title not available (Why is that?)
- Computer automation of general-to-specific model selection procedures
- Facts, Conjectures, and Improvements for Simulated Annealing
- Title not available (Why is that?)
- Equivalence between S-systems and Volterra systems
- Recasting nonlinear differential equations as S-systems: a canonical nonlinear form
- Symmetries of \(S\)-systems
- Mathematical models of purine metabolism in man
- Lotka-Volterra representation of general nonlinear systems
- A pharmacodynamic model for the action of the antibiotic imipenem on Pseudomonas aeruginosa populations in vitro
- Comparative characterization of the fermentation pathway of Saccharomyces cerevisiae using biochemical systems theory and metabolic control analysis: Model definition and nomenclature
- Comparative characterization of the fermentation pathway of Saccharomyces cerevisiae using biochemical systems theory and metabolic control analysis: Steady-state analysis
- Comparative characterization of the fermentation pathway of Saccharomyces cerevisiae using biochemical systems theory and metabolic control analysis: Model validation and dynamic behavior
- Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models
- The potential for signal integration and processing in interacting MAP kinase cascades
- Estimating parameters for generalized mass action models using constraint propagation
- Parameter estimation in modulated, unbranched reaction chains within biochemical systems
- Parameter reconstruction for biochemical networks using interval analysis
- Analysis of dynamic labeling data
- Design principles for elementary gene circuits: Elements, methods, and examples
- Efficient Solution of Nonlinear Ordinary Differential Equations Expressed in S-system Canonical Form
- Parameter estimation of S-distributions with alternating regression
- Title not available (Why is that?)
- Title not available (Why is that?)
- TheS-Distribution A Tool for Approximation and Classification of Univariate, Unimodal Probability Distributions
- Title not available (Why is that?)
- Title not available (Why is that?)
- Dynamic Trends in Distributions
- The S‐Distribution: Approximation of Discrete Distributions
- Title not available (Why is that?)
- Evolutionary Multi-Criterion Optimization
- On selecting models for nonlinear time series
- Constraints-based models: regulation of gene expression reduces the steady-state solution space
- Application of Bayesian trained RBF networks to nonlinear time-series modeling
- On the deduction of chemical reaction pathways from measurements of time series of concentrations
- A grid-oriented genetic algorithm framework for bioinformatics
Cited In (59)
- Differential equations in data analysis
- The importance and challenges of Bayesian parameter learning in systems biology
- Ensemble modeling of biological systems
- On the existence and uniqueness of an inverse problem in epidemiology
- Biological models' parameter estimation based on discrete measurements and adjoint sensitivity analysis
- Identification of parameters for large-scale kinetic models
- Estimation of biophysical parameters in a neuron model under random fluctuations
- Tensor based approach to the numerical treatment of the parameter estimation problems in mathematical immunology
- Mathematical modelling and assessment of the ph homeostasis mechanisms in \textit{Aspergillus niger} while in citric acid producing conditions
- Bifurcation analysis of models with uncertain function specification: how should we proceed?
- Parameter uncertainty in biochemical models described by ordinary differential equations
- Inverse problem studies of biochemical systems with structure identification of S-systems by embedding training functions in a genetic algorithm
- A general procedure for accurate parameter estimation in dynamic systems using new estimation errors
- Estimation of kinetic parameters in an S-system equation model for a metabolic reaction system using the Newton-Raphson method
- Component-based construction of bio-pathway models: the parameter estimation problem
- Biochemical systems theory: a review
- Inference of \(S\)-system models of genetic networks by solving one-dimensional function optimization problems
- Parameter estimation in a PDE model for the spatial spread of cocoa black pod disease
- Modeling the dynamics of age-structured polycyclic population of biological cells on the parameterized set of algebraic functions
- Optimal experimental design for discriminating between microbial growth models as function of suboptimal temperature
- Estimating parameters for generalized mass action models using constraint propagation
- Characterizability of metabolic pathway systems from time series data
- Parameter estimation in modulated, unbranched reaction chains within biochemical systems
- Estimation of parameters in a structured SIR model
- Global minimization and parameter estimation in computational biology.
- A distribution-matching method for parameter estimation and model selection in computational biology
- Autoregressive models for gene regulatory network inference: sparsity, stability and causality issues
- Application of one‐step method to parameter estimation in ODE models
- Parameter selection methods in inverse problem formulation
- Regulatory network of drug-induced enzyme production: parameter estimation based on the periodic dosing response measurement.
- Parameter identification and estimation for stage-structured population models
- Some novel techniques of parameter estimation for dynamical models in biological systems
- Identification of parameters of evolutionary model of monocyclic cells aggregation with the hop plants example
- Distributed finite-time state estimation of interconnected complex metabolic networks
- How to choose biomarkers in view of parameter estimation
- Sparse dynamical system identification with simultaneous structural parameters and initial condition estimation
- Global and local optimization in identification of parabolic systems
- Optimal rate of direct estimators in systems of ordinary differential equations linear in functions of the parameters
- Stochastic differential equations as a tool to regularize the parameter estimation problem for continuous time dynamical systems given discrete time measurements
- Reaction-based models of biochemical networks
- Computational optimization for S-type biological systems: cockroach genetic algorithm
- Separable nonlinear least-squares parameter estimation for complex dynamic systems
- On linear models and parameter identifiability in experimental biological systems
- Nonparametric dynamic modeling
- Operator-valued kernel-based vector autoregressive models for network inference
- A differentiable reformulation for E-optimal design of experiments in nonlinear dynamic biosystems
- Complexity analysis and parameter estimation of dynamic metabolic systems
- Simplification of a complex signal transduction model using invariants and flow equivalent servers
- On the identifiability of metabolic network models
- Mathematical modeling of monolignol biosynthesis in populus xylem
- Title not available (Why is that?)
- \(\sqrt{n}\)-consistent parameter estimation for systems of ordinary differential equations: bypassing numerical integration via smoothing
- A qualitative analysis of ubiquitous regulatory motifs in \textit{Saccharomyces cerevisiae} genetic networks
- Identification of parameters in systems biology
- Piecewise synergetic systems and applications in biochemical systems theory
- Evaluation of an S-system root-finding method for estimating parameters in a metabolic reaction model
- Kernel Ordinary Differential Equations
- Smooth functional tempering for nonlinear differential equation models
- An energetic reformulation of kinetic rate laws enables scalable parameter estimation for biochemical networks
Uses Software
This page was built for publication: Recent developments in parameter estimation and structure identification of biochemical and genomic systems
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2270528)