Estimating parameters for generalized mass action models using constraint propagation

DOI10.1016/J.MBS.2006.11.009MaRDI QIDQ2382409zbMATH OpenOpenAlexWikidataFDO

Authors W. Tucker, Zoltán Kutalik, Vincent Moulton

Publication date 9 October 2007

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2006.11.009

zbMATH Keywords

Biochemical systemsConstraint propagationGMA systemsInterval analysisMetabolic modellingParameter estimationS-systems

Mathematics Subject Classification ID

Interval and finite arithmetic (65G30) Numerical methods for ordinary differential equations (65L99) Software, source code, etc. for problems pertaining to biology (92-04) Biochemistry, molecular biology (92C40) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cites work

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• scientific article; zbMATH DE number 2035082 (Why is no real title available?)
• Nonlinear bounded-error state estimation of continuous-time systems
• Set membership state and parameter estimation for systems described by nonlinear differential equations

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(18)

• Method for inferring and extracting reliable genetic interactions from time-series profile of gene expression
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• Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach
• Recent developments in parameter estimation and structure identification of biochemical and genomic systems
• Parameter uncertainty in biochemical models described by ordinary differential equations
• Modeling of nonlinear biological phenomena modeled by S-systems
• Parameter estimation in modulated, unbranched reaction chains within biochemical systems
• Parameter estimation for metabolic networks with two stage Bregman regularization homotopy inversion algorithm
• A general procedure for accurate parameter estimation in dynamic systems using new estimation errors
• Bootstrapping least-squares estimates in biochemical reaction networks
• Biochemical systems theory: a review
• Inference of \(S\)-system models of genetic networks by solving one-dimensional function optimization problems
• An algorithm for continuous piecewise linear bounding of discrete time series data
• A distribution-matching method for parameter estimation and model selection in computational biology
• Inferring reaction systems from ordinary differential equations
• Evolutionary estimation of parameters in computational models of thymocyte dynamics
• Component-based construction of bio-pathway models: the parameter estimation problem
• Rigorous parameter reconstruction for differential equations with noisy data

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Uses Software

• C-XSC

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