Parameter estimation for metabolic networks with two stage Bregman regularization homotopy inversion algorithm

DOI10.1016/J.JTBI.2013.09.020MaRDI QIDQ2632487zbMATH OpenOpenAlexWikidataFDO

Authors Yanyan Li

Publication date 14 May 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2013.09.020

zbMATH Keywords

ordinary differential equationlarge scalestrong nonlinear

Mathematics Subject Classification ID

Physiology (general) (92C30) Systems biology, networks (92C42)

Recommendations

• Parameter estimation for biochemical reaction networks using Wasserstein distances
• Experimental design for parameter estimation in steady-state linear models of metabolic networks
• An inverse problem framework for dynamic metabolic resource allocation problems in systems biology
• An improved multi-parametric programming algorithm for flux balance analysis of metabolic networks
• Inferring metabolic networks using the Bayesian adaptive graphical Lasso with informative priors
• Parameter estimation for stochastic hybrid models of biochemical reaction networks
• Modeling and simulation of metabolic networks for estimation of biomass accumulation parame\-ters
• On the identifiability of metabolic network models
• Large‐Scale Statistical Parameter Estimation in Complex Systems with an Application to Metabolic Models

Cites work

• scientific article; zbMATH DE number 936298 (Why is no real title available?)
• A regularized solution with weighted bregman distances for the inverse problem of photoacoustic spectroscopy
• A study on the convergence of homotopy analysis method
• An Iterative Regularization Method for Total Variation-Based Image Restoration
• Computation and analysis of time-dependent sensitivities in generalized mass action systems
• Convergence analysis of the homotopy perturbation method for solving nonlinear ill-posed operator equations
• Estimating parameters for generalized mass action models using constraint propagation
• Notes on the homotopy analysis method: some definitions and theorems
• Parameter reconstruction for biochemical networks using interval analysis
• SUNDIALS
• Scatter search for chemical and bio-process optimization
• The application of homotopy analysis method to nonlinear equations arising in heat transfer
• The homotopy analysis method to solve the Burgers-Huxley equation

Cited in

(2)

• Large‐Scale Statistical Parameter Estimation in Complex Systems with an Application to Metabolic Models
• Complexity analysis and parameter estimation of dynamic metabolic systems

Describes a project that uses

Uses Software

• SUNDIALS

This page was built for publication: Parameter estimation for metabolic networks with two stage Bregman regularization homotopy inversion algorithm

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2632487)