Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach

DOI10.1007/S00285-020-01522-WMaRDI QIDQ2192666zbMATH OpenOpenAlexWikidataFDO

Authors Leonard Schmiester, Daniel Weindl, J. Hasenauer

Publication date 17 August 2020

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1007/s00285-020-01522-w

zbMATH Keywords

parameter estimationnumerical optimizationsystems biologyqualitative datadynamical modeling

Mathematics Subject Classification ID

Dynamical systems in biology (37N25) Numerical solution of inverse problems involving ordinary differential equations (65L09)

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Cites work

• scientific article; zbMATH DE number 2107836 (Why is no real title available?)
• Joining forces of Bayesian and frequentist methodology: a study for inference in the presence of non-identifiability
• SUNDIALS
• The analysis of proximities: Multidimensional scaling with an unknown distance function: I, II

Cited in

(4)

• Solution to an identification parameter problem for system of nonlinear differential equations
• Model selection focusing on longtime behavior of differential equations
• pyPESTO
• Parameter ranking by orthogonalization -- applied to nonlinear mechanistic models

Describes a project that uses

Uses Software

• PEtab
• PyBioNetFit
• PESTO
• Data2Dynamics
• AMIGO
• COPASI
• GenSSI
• SciPy
• SUNDIALS

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