Component-based construction of bio-pathway models: the parameter estimation problem

DOI10.1016/J.TCS.2011.02.013MaRDI QIDQ548481zbMATH OpenOpenAlexFDO

Authors Geoffrey Koh, David Hsu, P. S. Thiagarajan

Publication date 28 June 2011

Published in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tcs.2011.02.013

zbMATH Keywords

belief propagationbiochemical networkscomponentscompositiondecompositionfactor graphsODEs

Mathematics Subject Classification ID

Applications of graph theory (05C90) Applications of statistics to biology and medical sciences; meta analysis (62P10) Computing methodologies and applications (68U99) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

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Cites work

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Cited in

(5)

• Refining cellular pathway models using an ensemble of heterogeneous data sources
• Inference of the stochastic MAPK pathway by modified diffusion bridge method
• Identification of components in biochemical pathways: extensive aqpplication to SBML models
• Modular parameter identification of biomolecular networks
• Parallelized Parameter Estimation of Biological Pathway Models

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Uses Software

• COPASI

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