Inference of the stochastic MAPK pathway by modified diffusion bridge method

DOI10.1007/S10100-012-0237-8MaRDI QIDQ1788913zbMATH OpenOpenAlexFDO

Authors Vilda Purutçuoğlu

Publication date 9 October 2018

Published in CEJOR. Central European Journal of Operations Research (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10100-012-0237-8

zbMATH Keywords

Markov chain Monte Carlomodified diffusion bridge algorithmoperations research in computational biology

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Monte Carlo methods (65C05) Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.) (60J70) Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

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Cites work

• scientific article; zbMATH DE number 3806623 (Why is no real title available?)
• An algorithmic approach to analyse genetic networks and biological energy production: an introduction and contribution where OR meets biology†
• Analysis of high dimensional multivariate stochastic volatility models
• Bayes and empirical Bayes methods for data analysis.
• Bayesian Inference for Stochastic Kinetic Models Using a Diffusion Approximation
• Bayesian inference for nonlinear multivariate diffusion models observed with error
• Bayesian inference for the MAPK/ERK pathway by considering the dependency of the kinetic parameters
• High-dimensional graphs and variable selection with the Lasso
• Sparse inverse covariance estimation with the graphical lasso
• Stochastic modelling for systems biology.
• Weak convergence and optimal scaling of random walk Metropolis algorithms

Cited in

(2)

• Extended lasso-type MARS (LMARS) model in the description of biological network
• Bayesian inference for the MAPK/ERK pathway by considering the dependency of the kinetic parameters

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