Parallelized Parameter Estimation of Biological Pathway Models

DOI10.1007/978-3-319-26916-0_3MaRDI QIDQ5376900zbMATH OpenOpenAlexFDO

Authors

Publication date 21 May 2019

Published in Hybrid Systems Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-319-26916-0_3

zbMATH Keywords

biopathway modelsBLTLgraphics processing unitsordinary differential equationsparameter estimationstatistical model checking

Mathematics Subject Classification ID

Computational methods for problems pertaining to biology (92-08) Systems biology, networks (92C42)

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Cited in

(9)

• Experiments-based parameter identification on the GPU for cooperative systems
• Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle
• Global minimization and parameter estimation in computational biology.
• Covariance-based analyses of biological pathways
• Probabilistic approximations of ODEs based bio-pathway dynamics
• Component-based construction of bio-pathway models: the parameter estimation problem
• End-to-end statistical model checking for parametric ODE models
• Data assimilation using a GPU accelerated path integral Monte Carlo approach
• End-to-end statistical model checking for parameterization and stability analysis of ODE models

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