Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle

DOI10.1007/S10898-007-9273-7MaRDI QIDQ2481377zbMATH OpenOpenAlexFDO

Authors Thomas D. Panning, Layne T. Watson, Nicholas A. Allen, Katherine C. Chen, Clifford A. Shaffer, John J. Tyson

Publication date 9 April 2008

Published in Journal of Global Optimization (Search for Journal in Brave)

Full work available at URL http://eprints.cs.vt.edu/archive/00000730/01/JGO06.pdf

zbMATH Keywords

MADSComputational biologyDirect searchDIviding RECTangles algorithmMesh Adaptive Direct Search algorithm

Mathematics Subject Classification ID

Searching and sorting (68P10) Nonnumerical algorithms (68W05)

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Cites work

• Dynamic data structures for a direct search algorithm
• Frame based methods for unconstrained optimization
• Lipschitzian optimization without the Lipschitz constant
• Mesh Adaptive Direct Search Algorithms for Constrained Optimization

Cited in

(9)

• A modified DIviding RECTangles algorithm for a problem in astrophysics
• A univariate global search working with a set of Lipschitz constants for the first derivative
• Exploiting derivative-free local searches in DIRECT-type algorithms for global optimization
• A modified uniformization method for the solution of the chemical master equation
• Lipschitz gradients for global optimization in a one-point-based partitioning scheme
• Design and implementation of a massively parallel version of DIRECT
• On \texttt{MATLAB} experience in accelerating \texttt{DIRECT-GLce} algorithm for constrained global optimization through dynamic data structures and parallelization
• Radial basis function collocation for the chemical master equation
• Parallelized Parameter Estimation of Biological Pathway Models

Describes a project that uses

Uses Software

• DIRECT

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