Integration of kinetic information on yeast sphingolipid metabolism in dynamical pathway models

DOI10.1016/J.JTBI.2003.08.010MaRDI QIDQ2187478zbMATH OpenOpenAlexWikidataFDO

Authors Fernando Alvarez-Vasquez, Kellie J. Sims, Yusuf A. Hannun, Eberhard O. (Editor-in-Chief) Voit

Publication date 3 June 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2003.08.010

zbMATH Keywords

biochemical systems theorygeneralized mass action systemmetabolic pathway analysiss-systemsignal transductionsphingolipid metabolism

Mathematics Subject Classification ID

Systems biology, networks (92C42) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cites work

• Analysis of dynamic labeling data
• Biochemical and genomic regulation of the trehalose cycle in yeast: review of observations and canonical model analysis
• Design principles and operating principles: the Yin and Yang of optimal functioning
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• scientific article; zbMATH DE number 1896100 (Why is no real title available?)
• Mathematical models of purine metabolism in man

Cited in

(9)

• Incorporating expression data in metabolic modeling: a case study of lactate dehydrogenase
• Recent developments in parameter estimation and structure identification of biochemical and genomic systems
• Parameter estimation in modulated, unbranched reaction chains within biochemical systems
• Modeling sphingomyelin synthase 1 driven reaction at the Golgi apparatus can explain data by inclusion of a positive feedback mechanism
• Construction of kinetic models for metabolic reaction networks: lessons learned in analysing short-term stimulus response data
• Biochemical systems theory: a review
• A functional dynamics approach to modelling of glycolysis
• The potential roles of transacylation in intracellular lipolysis and related Qssa approximations
• Format-preserving reduction of canonical nonlinear models

Describes a project that uses

Uses Software

• BSTLab

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