Identification of parameters in systems biology

DOI10.1016/J.MBS.2018.09.004MaRDI QIDQ669078zbMATHOpenAlexWikidataFDO

Authors Ugur G. Abdulla, Roby Poteau

Publication date 20 March 2019

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2018.09.004

zbMATH Keywords

parameter estimationTikhonov regularizationgenetic regulatory networksystems biologybistable switchnonlinear ODEsrepressilator model

Mathematics Subject Classification ID

Systems biology, networks (92C42) Population dynamics (general) (92D25) Inverse problems involving ordinary differential equations (34A55)

Recommendations

• Inverse problems in systems biology
• Determination of parameters for Cauchy's problem for systems of ODEs with application to biological modelling
• Recent developments in parameter estimation and structure identification of biochemical and genomic systems
• scientific article; zbMATH DE number 1488902
• Quasilinearization and inverse problems of nonlinear dynamics

Cites work

• scientific article; zbMATH DE number 3551792 (Why is no real title available?)
• scientific article; zbMATH DE number 3225686 (Why is no real title available?)
• scientific article; zbMATH DE number 3296475 (Why is no real title available?)
• A regularizing Levenberg - Marquardt scheme, with applications to inverse groundwater filtration problems
• Global identifiability of the parameters of nonlinear systems with specified inputs: A comparison of methods
• Inverse problems in systems biology
• MPFR
• Quasilinearization and inverse problems for nonlinear control systems
• Quasilinearization and inverse problems of nonlinear dynamics
• Recent developments in parameter estimation and structure identification of biochemical and genomic systems
• Robust estimation of parameters in nonlinear ordinary differential equation models

Cited in

(7)

• Inverse problem of the Holling-Tanner model and its solution
• On linear models and parameter identifiability in experimental biological systems
• Identification of parameters for large-scale kinetic models
• Nonsearch paradigm for large-scale parameter-identification problems in dynamical systems related to oncogenic hyperplasia
• Parameter identification in ODE models with oscillatory dynamics: a Fourier regularization approach
• Modular parameter identification of biomolecular networks
• Identification and validation of quasispecies models for biological systems

Describes a project that uses

Uses Software

• MPFR
• NL2SOL
• Eigen
• GSL
• AMIGO
• Data2Dynamics
• PESTO
• Qlopt

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