Evaluation of an S-system root-finding method for estimating parameters in a metabolic reaction model

DOI10.1016/J.MBS.2018.01.010MaRDI QIDQ1644693zbMATHOpenAlexWikidataFDO

Authors Michio Iwata, Atsuko Miyawaki-Kuwakado, Erika Yoshida, Soichiro Komori, Fumihide Shiraishi

Publication date 22 June 2018

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2018.01.010

zbMATH Keywords

root findingtranslocationbiochemical systems theorymetabolic reaction networkS-system method

Mathematics Subject Classification ID

Systems biology, networks (92C42) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cites work

• scientific article; zbMATH DE number 425313 (Why is no real title available?)
• A Spline Least Squares Method for Numerical Parameter Estimation in Differential Equations
• A comparison of the monomial method and the S-system method for solving systems of algebraic equations
• A monomial-based method for solving systems of non-linear algebraic equations
• A new parametric method to smooth time-series data of metabolites in metabolic networks
• An efficient method for calculation of dynamic logarithmic gains in biochemical systems theory
• Estimation of kinetic parameters in an S-system equation model for a metabolic reaction system using the Newton-Raphson method
• Finding multiple roots of nonlinear algebraic equations using S-system methodology
• Numerical recipes. The art of scientific computing.
• Recent developments in parameter estimation and structure identification of biochemical and genomic systems
• Solution of a two-point boundary value model of immobilized enzyme reactions, using an \(S\)-system-based root-finding method
• The complex-step derivative approximation
• Using Complex Variables to Estimate Derivatives of Real Functions

Cited in

(9)

• Modeling, simulating, and parameter Fitting of biochemical kinetic experiments
• Mathematical modeling of monolignol biosynthesis in populus xylem
• Estimation of kinetic parameters in an S-system equation model for a metabolic reaction system using the Newton-Raphson method
• NEW METHOD TO ESTIMATE PARAMETERS IN A NONLINEAR SYSTEM OF PURINE NUCLEOTIDE METABOLISM
• Identification of microbiota dynamics using robust parameter estimation methods
• Optimizing bicoid signal extraction
• A simple and highly accurate numerical differentiation method for sensitivity analysis of large-scale metabolic reaction systems
• Using an improved bee memory differential evolution algorithm for parameter estimation to simulate biochemical pathways
• Highly accurate computation of dynamic sensitivities in metabolic reaction systems by a Taylor series method

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