Separable nonlinear least-squares parameter estimation for complex dynamic systems
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Publication:2175990
DOI10.1155/2020/6403641zbMATH Open1435.92003arXiv1908.03717OpenAlexW3015076400MaRDI QIDQ2175990FDOQ2175990
Authors: Itai Dattner, Harold Ship, Eberhard O. (Editor-in-Chief) Voit 
Publication date: 30 April 2020
Published in: Complexity (Search for Journal in Brave)
Abstract: Nonlinear dynamic models are widely used for characterizing functional forms of processes that govern complex biological pathway systems. Over the past decade, validation and further development of these models became possible due to data collected via high-throughput experiments using methods from molecular biology. While these data are very beneficial, they are typically incomplete and noisy, so that inferring parameter values for complex dynamic models is associated with serious computational challenges. Fortunately, many biological systems have embedded linear mathematical features, which may be exploited, thereby improving fits and leading to better convergence of optimization algorithms. In this paper, we explore options of inference for dynamic models using a novel method of {it separable nonlinear least-squares optimization}, and compare its performance to the traditional nonlinear least-squares method. The numerical results from extensive simulations suggest that the proposed approach is at least as accurate as the traditional nonlinear least-squares, but usually superior, while also enjoying a substantial reduction in computational time.
Full work available at URL: https://arxiv.org/abs/1908.03717
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Point estimation (62F10) Applications of statistics to biology and medical sciences; meta analysis (62P10) General biostatistics (92B15) Systems biology, networks (92C42)
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