Gene regulatory networks. Methods and protocols
DOI10.1007/978-1-4939-8882-2zbMath1417.92005MaRDI QIDQ1721981
No author found.
Publication date: 13 February 2019
Published in: Methods in Molecular Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/978-1-4939-8882-2
ordinary differential equations; decision tree; ensemble methods; Bayesian network; random forest; observational data; gene regulatory network; integrative analysis; differential module networks; genome scale; single-cell data; small network; stability inference; statistical network inference; timeseries
92C40: Biochemistry, molecular biology
92-06: Proceedings, conferences, collections, etc. pertaining to biology
92-08: Computational methods for problems pertaining to biology
92C42: Systems biology, networks
Uses Software
- PSwarm
- R
- STRSCNE
- SUNDIALS
- Bio-PEPA
- NOMAD
- COMSOL
- BOBYQA
- CVODES
- SOLNP
- TRESNEI
- NL2SOL
- SIMoNe
- KLU
- WGCNA
- glasso
- E-CELL
- BioBayes
- fdrtool
- bnlearn
- EDISON
- huge
- MEIGO
- GGMselect
- MultiNest
- FATODE
- QUIC
- COPASI
- SynTReN
- KEGG
- BiNGO
- PlantTFDB
- ARACNE
- FIMO
- SIRENE
- BioGRID
- DGCA
- JASPAR
- Matrix eQTL
- ORBIT
- sva
- UniProt
- GeneNetWeaver
- TIGRESS
- NARROMI
- Data2Dynamics
- RegulonDB
- PESTO
- systemPipeR
- bnstruct
- Diurnal
- DREM
- SPINE
- ANAT
- NetBenchmark
- dynGENIE3
- SCENIC
- SCODE
- REDfly
- Netter
- DINGO
- GeneSPIDER
- TRaCE+
- BGRMI
- SINCERITIES
- IntScore
- CopraRNA
- IntaRNA
- SGN Sim
- GeNGe
- sgnesR
- MMG
- BioPreDyn-bench
- LASSIE
- SOSlib
- Path2Models
Cites Work
