Cited in
(78)- Seed-driven learning of position probability matrices from large sequence sets
- Detection-theoretic analysis of MatInspector
- Self-overlapping Occurrences and Knuth-Morris-Pratt Algorithm for Weighted Matching
- Construction of minimal deterministic finite automata from biological motifs
- COXPRESdb
- Cross-species network and transcript transfer
- Establishing a statistic model for recognition of steroid hormone response elements
- Fast profile matching algorithms - A survey
- Gene regulatory networks. Methods and protocols
- Discovering cis-regulatory modules by optimizing barbecues
- Graph centrality based prediction of cancer genes
- Transcription factor-binding site identification and gene classification via fusion of the supervised-weighted discrete kernel clustering and support vector machine
- Theory on the looping mediated directional-dependent propulsion of transcription factors along DNA
- Identification of specific sequence motifs in the upstream region of 242 human miRNA genes
- Detection of over-represented motifs corresponding to known TFBSs via motif clustering and matching
- Algorithms for learning parsimonious context trees
- Streaming \(k\)-mismatch with error correcting and applications
- PyMix
- Footprinter
- BioProspector
- MotifCM
- TFMPvalue
- BioGRID
- BiNGO
- CLENCH
- Jstacs
- ARACNE
- Enrichr
- DREME
- FIMO
- GAME
- TRANSWESD
- TRANSFAC
- WebLogo
- WebGestalt
- sva
- BIPS
- CONREAL
- InteroPORC
- modMine
- BayesPeak
- ORegAnno
- rVISTA
- UniPROBE
- TFBSTools
- GOLEM
- WordSpy
- MatInspector
- MATCH
- CePa
- CentiServer
- Sfold
- CGBayesNets
- TIGRESS
- RegulonDB
- TM4
- ArrayExpress
- systemPipeR
- MAVisto
- DECOD
- SeedHam
- CpG island searcher
- FISim
- GOrilla
- CONFAC
- NestedMICA
- TileMap
- TFExplorer
- WebMOTIFS
- FingerPRINTScan
- PATMAT
- Self-organizing neural networks to support the discovery of DNA-binding motifs
- A posterior probability approach for gene regulatory network inference in genetic perturbation data
- Computational studies on Alzheimer's disease associated pathways and regulatory patterns using microarray gene expression and network data: revealed association with aging and other diseases
- Regulatory Signals in Genomic Sequences
- Transcription factor binding sites detection by using alignment-based approach
- Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen
- On-Line Pattern Matching on Uncertain Sequences and Applications
This page was built for software: JASPAR
