Transcription factor binding sites detection by using alignment-based approach

DOI10.1016/J.JTBI.2012.03.039zbMath1397.92211OpenAlexW1973307543WikidataQ51381321 ScholiaQ51381321MaRDI QIDQ1784374

Mehdi Sadeghi, Ghasem Mahdevar, Abbas Nowzari-Dalini

Publication date: 26 September 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2012.03.039

zbMATH Keywords

dynamic programminggenetic algorithminformation contentsequence alignmentgene expression

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Software, source code, etc. for problems pertaining to biology (92-04)

Uses Software

• BioProspector
• TRANSFAC
• JASPAR
• RegulonDB

Cites Work

• Bioinformatic principles underlying the information content of transcription factor binding sites
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