RegulonDB

swMATH25948MaRDI QIDQ37681FDOQ37681

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Cited In (30)

• Gene regulatory networks. Methods and protocols
• Modeling and Analysis of Gene Regulatory Networks
• Fast computing global structural balance in signed networks based on memetic algorithm
• Binding of transcription factors adapts to resolve information-energy tradeoff
• Genome size and operon content
• Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea
• Characteristics of promoter architecture-dependent expression noise and bursting kinetics
• A hybrid promoter analysis methodology for prokaryotic genomes
• Computational challenges in systems biology
• Wilks' \(\Lambda \) dissimilarity measures for gene clustering: an approach based on the identification of transcription modules
• Bayesian joint modeling of multiple gene networks and diverse genomic data to identify target genes of a transcription factor
• Directionality of real world networks as predicted by path length in directed and undirected graphs
• Dynamics of transcription of closely spaced promoters in \textit{Escherichia coli}, one event at a time
• Transcription factor binding sites detection by using alignment-based approach
• Modeling for evolving biological networks with scale-free connectivity, hierarchical modularity, and disassortativity
• Operon prediction based on SVM
• Constrained Community-Based Gene Regulatory Network Inference
• A mixed-integer optimization framework for the synthesis and analysis of regulatory networks
• Ranking of network elements based on functional substructures
• Embedding of biological regulatory networks and property preservation
• The recognition and prediction of \(\sigma^{70}\) promoters in \textit{Escherichia coli} K-12
• A modified Ising model of Barabási-Albert network with gene-type spins
• Computational prediction of conserved operons and phylogenetic footprinting of transcription regulatory elements in the metal-reducing bacterial family \textit{Geobacteraceae}
• Modeling promoter search by \textit{E. coli} RNA polymerase: one-dimensional diffusion in a sequence-dependent energy landscape
• Mathematical conditions for induced cell differentiation and trans-differentiation in adult cells
• Bayesian Variational Inference for Exponential Random Graph Models
• Effects of alternative connectivity on behavior of randomly constructed Boolean networks
• BacPP: bacterial promoter prediction -- a tool for accurate sigma-factor specific assignment in enterobacteria
• Information content based model for the topological properties of the gene regulatory network of \textit{Escherichia coli}
• Regulatory dynamics of standard two-component systems in bacteria

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