Effects of alternative connectivity on behavior of randomly constructed Boolean networks

DOI10.1016/S0167-2789(02)00530-4MaRDI QIDQ1607432zbMATH OpenFDO

Authors Chikoo Oosawa, Michael A. Savageau

Publication date 31 July 2002

Published in Physica D (Search for Journal in Brave)

zbMATH Keywords

topologyrank distributionsregulary gene networks

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Cell biology (92C37)

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Cites work

• scientific article; zbMATH DE number 3205804 (Why is no real title available?)
• An order parameter for networks of automata
• Collective dynamics of `small-world' networks
• Design principles for elementary gene circuits: Elements, methods, and examples
• Dynamical behaviour of biological regulatory networks. II: Immunity control in bacteriophage lambda
• Emergence of Scaling in Random Networks
• Inhomogeneous Kauffman models at the borderline between order and chaos
• Median attractor and transients in random boolean nets
• Mutual information functions versus correlation functions.

Cited in

(20)

• A Computational Scheme Based on Random Boolean Networks
• Complex networks: structure and dynamics
• On the dynamics of scale-free Boolean networks.
• Improving the efficiency of attractor cycle identification in Boolean networks
• Perturbation in Genetic Regulatory Networks: Simulation and Experiments
• Boolean dynamics of Kauffman models with a scale-free network
• An efficient approach of attractor calculation for large-scale Boolean gene regulatory networks
• P\(_-\)UNSAT approach of attractor calculation for Boolean gene regulatory networks
• From topology to dynamics in biochemical networks
• Measuring distances between complex networks
• A proposal for using the ensemble approach to understand genetic regulatory networks
• Intrinsic properties of Boolean dynamics in complex networks
• Boolean dynamics of networks with scale-free topology
• Scale-free topologies and activatory-inhibitory interactions
• Stabilizing and Destabilizing Effects of Embedding 3-Node Subgraphs on the State Space of Boolean Networks
• Dynamics of unperturbed and noisy generalized Boolean networks
• The simulation of gene knock-out in scale-free random Boolean models of genetic networks
• Inferring models of gene expression dynamics
• Superpolynomial growth in the number of attractors in Kauffman networks
• Design of a network with state stability

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Uses Software

• RegulonDB

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