Inferring models of gene expression dynamics

DOI10.1016/J.JTBI.2004.05.022MaRDI QIDQ2186487zbMATH OpenOpenAlexWikidataFDO

Authors Theodore J. Perkins, Mike Hallett, Leon Glass

Publication date 9 June 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2004.05.022

zbMATH Keywords

differential equationsgenetic network inferencelogic

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

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Cites work

• Combinatorial explosion in model gene networks.
• Effects of alternative connectivity on behavior of randomly constructed Boolean networks
• scientific article; zbMATH DE number 50840 (Why is no real title available?)
• scientific article; zbMATH DE number 1303613 (Why is no real title available?)
• Modeling the complexity of genetic networks: Understanding multigenic and pleiotropic regulation.
• The electrical resistance of a graph captures its commute and cover times

Cited in

(18)

• Hybrid models of genetic networks: mathematical challenges and biological relevance
• A data-driven method to learn a jump diffusion process from aggregate biological gene expression data
• Information recovery in molecular biology: causal modelling of regulated promoter switching experiments
• Forecasting polynomial dynamics
• Introduction to focus issue: quantitative approaches to genetic networks
• Identifiability and inference of pathway motifs by epistasis analysis
• Two-layer mathematical modeling of gene expression: incorporating DNA-level information and system dynamics
• Modelling Nonstationary Gene Regulatory Processes
• The gene expression matrix: Towards the extraction of genetic network architectures
• A model-based analysis to infer the functional content of a gene list
• Data identification for improving gene network inference using computational algebra
• Inferring Regulatory Networks from Time Series Expression Data and Relational Data Via Inductive Logic Programming
• Identification of regulatory network motifs from gene expression data
• Center manifold analysis of a DDE model of gene expression
• Estimation and inversion of the effects of cell population asynchrony in gene expression time-series
• Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework
• An improved method for inference of piecewise linear systems by detecting jumps using derivative estimation
• A mathematical framework for the control of piecewise-affine models of gene networks

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