Data identification for improving gene network inference using computational algebra

DOI10.1007/S11538-014-9979-XMaRDI QIDQ486662zbMATH OpenOpenAlexWikidataFDO

Authors Brandilyn Stigler, Elena S. Dimitrova

Publication date 16 January 2015

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11538-014-9979-x

zbMATH Keywords

model identificationpolynomial dynamical systemcomputational algebragene network inferencedata selectionGröbner basis

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 638938 (Why is no real title available?)
• scientific article; zbMATH DE number 704831 (Why is no real title available?)
• scientific article; zbMATH DE number 1163422 (Why is no real title available?)
• scientific article; zbMATH DE number 5494031 (Why is no real title available?)
• A computational algebra approach to the reverse engineering of gene regulatory networks
• Algebraic Statistics for Computational Biology
• Decomposition and simulation of sequential dynamical systems
• Identification of Boolean control networks
• Inferring the topology of gene regulatory networks: an algebraic approach to reverse engineering
• Mathematical Models in Biology
• Mathematical concepts and methods in modern biology. Using modern discrete models
• Parameter estimation for Boolean models of biological networks
• Quantum \(sl(2)\) action on a divided-power quantum plane at even roots of unity
• Realization of Boolean control networks
• The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in \textit{Drosophila melanogaster}

Cited in

(6)

• Geometric characterization of data sets with unique reduced Gröbner bases
• Small Gröbner fans of ideals of points
• A Unified Approach to Reverse Engineering and Data Selection for Unique Network Identification
• Qualitative investigation of a gene model using computer algebra algorithms
• Algebraic model selection and experimental design in biological data science
• Inferring models of gene expression dynamics

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Uses Software

• Polynome

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