Design principles for elementary gene circuits: Elements, methods, and examples
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(30)- The asymptotical behavior of cyclic genetic regulatory networks
- Alternative designs for a genetic switch: Analysis of switching times using the piecewise power-law representation
- Gene circuit designs for noisy excitable dynamics
- Gene regulation in continuous cultures: a unified theory for bacteria and yeasts
- Bistable responses in bacterial genetic networks: designs and dynamical consequences
- Structure-function relations are subtle in genetic regulatory networks
- A mathematical model for copper homeostasis in Enterococcus hirae
- Biochemical systems theory: a review
- Scaffold-mediated nucleation of protein signaling complexes: elementary principles
- Bistability of the lac operon during growth of Escherichia coli on lactose and lactose + glucose
- Robust filtering circuit design for stochastic gene networks under intrinsic and extrinsic molecular noises
- Inferring gene networks from steady-state response to single-gene perturbations
- On the estimation of robustness and filtering ability of dynamic biochemical networks under process delays, internal parametric perturbations and external disturbances
- Monostability and multistability of genetic regulatory networks with different types of regulation functions
- Recent developments in parameter estimation and structure identification of biochemical and genomic systems
- Phenotypic deconstruction of gene circuitry
- Requirement for multiple activation signals by anti-inflammatory feedback in macrophages
- Mathematical classification of regulatory logics for compound environmental changes
- The diffusive influx and carrier efflux have a strong effect on the bistability of the \textit{lac} operon in \textit{Escherichia coli}
- The timing of TNF and IFN-\(\gamma\) signaling affects macrophage activation strategies during \textit{Mycobacterium tuberculosis} infection
- Analysis of operating principles with S-system models
- Design of the lac gene circuit revisited
- Methods for and results from the study of design principles in molecular systems
- Dynamic patterns of gene regulation. I: Simple two-gene systems
- A hybrid promoter analysis methodology for prokaryotic genomes
- Controllability of non-linear biochemical systems
- Multistability of genetic regulatory networks
- Evaluation of the performance of mechanisms for noise attenuation in a single-gene expression
- Effects of alternative connectivity on behavior of randomly constructed Boolean networks
- Phenotype-centric modeling for elucidation of biological design principles
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