Inferring gene networks from steady-state response to single-gene perturbations

DOI10.1016/J.JTBI.2005.04.027MaRDI QIDQ2196901zbMATH OpenOpenAlexWikidataFDO

Authors Paul Brazhnik

Publication date 3 September 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2005.04.027

zbMATH Keywords

gene networksreverse engineeringunravelinginferring networksSOS pathway

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Systems biology, networks (92C42)

Recommendations

• A posterior probability approach for gene regulatory network inference in genetic perturbation data
• Inferring stable genetic networks from steady-state data
• Fitting Boolean networks from steady state perturbation data
• Inference on the structure of gene regulatory networks
• Learning a nonlinear dynamical system model of gene regulation: A perturbed steady-state approach

Cites work

• Design principles for elementary gene circuits: Elements, methods, and examples
• Modeling transcriptional control in gene networks -- methods, recent results, and future directions
• On the deduction of chemical reaction pathways from measurements of time series of concentrations

Cited in

(6)

• An improved method for inference of piecewise linear systems by detecting jumps using derivative estimation
• Inferring gene regulatory networks from temporal expression profiles under time-delay and noise
• Inferring stable genetic networks from steady-state data
• Inference of signaling and gene regulatory networks by steady-state perturbation experiments: structure and accuracy
• A mathematical program to refine gene regulatory networks
• Joint Gene Network Construction by Single-Cell RNA Sequencing Data

This page was built for publication: Inferring gene networks from steady-state response to single-gene perturbations

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2196901)